Variant report

Variant	rs1969905
Chromosome Location	chr10:94738937-94738938
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94737878..94739784-chr10:94741824..94744118,2	MCF-7	breast:
2	chr10:94738549..94740321-chr10:94754621..94757094,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10748585	0.87[EUR][1000 genomes]
rs10786058	0.83[EUR][1000 genomes]
rs10786059	0.86[EUR][1000 genomes]
rs10786060	0.86[EUR][1000 genomes]
rs10786061	0.87[EUR][1000 genomes]
rs10786063	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10882125	0.87[EUR][1000 genomes]
rs10882126	0.86[EUR][1000 genomes]
rs10882127	0.87[EUR][1000 genomes]
rs10882129	0.87[EUR][1000 genomes]
rs10882130	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10882132	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10882135	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882136	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11187209	0.87[EUR][1000 genomes]
rs12251276	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1571034	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2031616	0.82[AFR][1000 genomes]
rs2274374	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4917670	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4918435	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4933245	0.87[EUR][1000 genomes]
rs4933246	0.87[EUR][1000 genomes]
rs4933751	0.87[EUR][1000 genomes]
rs4933753	0.87[EUR][1000 genomes]
rs4933754	0.87[EUR][1000 genomes]
rs4933756	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7082214	0.86[AFR][1000 genomes]
rs7908826	0.86[AFR][1000 genomes]
rs7914459	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs835238	0.83[AFR][1000 genomes]
rs835247	0.82[AFR][1000 genomes]
rs9633696	0.87[EUR][1000 genomes]
rs9645558	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs980203	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv551941	chr10:94670849-94782735	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv467435	chr10:94716313-94779550	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv551943	chr10:94716313-94779550	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94652600-94742400	Weak transcription	HSMMtube	muscle
2	chr10:94658000-94750000	Weak transcription	Aorta	Aorta
3	chr10:94662600-94748400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr10:94710400-94741400	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr10:94712600-94787800	Weak transcription	Left Ventricle	heart
6	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr10:94720200-94739200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr10:94730800-94753400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:94730800-94773400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:94731600-94777200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr10:94732200-94742400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr10:94732600-94780800	Weak transcription	Psoas Muscle	Psoas
13	chr10:94732800-94740200	Weak transcription	Fetal Intestine Small	intestine
14	chr10:94732800-94742400	Weak transcription	Fetal Muscle Leg	muscle
15	chr10:94732800-94750400	Weak transcription	Primary hematopoietic stem cells	blood
16	chr10:94733200-94749400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr10:94733400-94743600	Weak transcription	Primary T cells from cord blood	blood
18	chr10:94733600-94750400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr10:94734000-94750400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr10:94734200-94748800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr10:94734400-94739200	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr10:94734400-94739600	Weak transcription	Liver	Liver
23	chr10:94734400-94741600	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr10:94735000-94759200	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr10:94736000-94753600	Weak transcription	Gastric	stomach
26	chr10:94736800-94748800	Weak transcription	K562	blood
27	chr10:94737000-94739800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr10:94737600-94741200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr10:94737600-94744800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:94737800-94740800	Weak transcription	HUVEC	blood vessel
31	chr10:94737800-94760000	Weak transcription	Primary B cells from cord blood	blood

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