Variant report

Variant	rs7908826
Chromosome Location	chr10:94742629-94742630
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94740523..94743035-chr10:94748693..94750893,2	K562	blood:
2	chr10:94742230..94747039-chr10:94747963..94752484,4	K562	blood:
3	chr10:94737878..94739784-chr10:94741824..94744118,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10509647	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10882132	0.85[AFR][1000 genomes]
rs10882133	0.92[EUR][1000 genomes]
rs10882134	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10882135	0.92[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10882136	0.84[ASN][1000 genomes]
rs10882137	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882138	0.92[EUR][1000 genomes]
rs11187212	0.87[EUR][1000 genomes]
rs11187226	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12251276	0.85[AFR][1000 genomes]
rs1571034	0.83[ASN][1000 genomes]
rs1969905	0.86[AFR][1000 genomes]
rs1998861	0.92[EUR][1000 genomes]
rs2031616	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2094231	0.80[EUR][1000 genomes]
rs4918435	0.84[ASN][1000 genomes]
rs4919312	0.90[EUR][1000 genomes]
rs4933755	0.86[EUR][1000 genomes]
rs6583852	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7068012	0.80[EUR][1000 genomes]
rs7069010	0.84[EUR][1000 genomes]
rs7082214	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085308	0.87[EUR][1000 genomes]
rs7094393	0.87[EUR][1000 genomes]
rs7095772	0.81[EUR][1000 genomes]
rs7914459	0.85[AFR][1000 genomes]
rs7914571	0.87[EUR][1000 genomes]
rs7915463	0.81[EUR][1000 genomes]
rs7919589	0.81[EUR][1000 genomes]
rs835238	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs835247	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs980203	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv551941	chr10:94670849-94782735	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv467435	chr10:94716313-94779550	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv551943	chr10:94716313-94779550	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94658000-94750000	Weak transcription	Aorta	Aorta
2	chr10:94662600-94748400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr10:94712600-94787800	Weak transcription	Left Ventricle	heart
4	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:94730800-94753400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:94730800-94773400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr10:94731600-94777200	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr10:94732600-94780800	Weak transcription	Psoas Muscle	Psoas
9	chr10:94732800-94750400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr10:94733200-94749400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:94733400-94743600	Weak transcription	Primary T cells from cord blood	blood
12	chr10:94733600-94750400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:94734000-94750400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr10:94734200-94748800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:94735000-94759200	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr10:94736000-94753600	Weak transcription	Gastric	stomach
17	chr10:94736800-94748800	Weak transcription	K562	blood
18	chr10:94737600-94744800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:94737800-94760000	Weak transcription	Primary B cells from cord blood	blood
20	chr10:94741400-94760800	Weak transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links