Variant report

Variant	rs1998861
Chromosome Location	chr10:94745697-94745698
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94742230..94747039-chr10:94747963..94752484,4	K562	blood:
2	chr10:94744689..94747532-chr10:94748768..94751037,3	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10509647	0.85[EUR][1000 genomes]
rs10882133	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10882134	0.95[EUR][1000 genomes]
rs10882137	0.98[EUR][1000 genomes]
rs10882138	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187226	0.85[EUR][1000 genomes]
rs12415602	0.83[ASN][1000 genomes]
rs1326330	0.83[ASN][1000 genomes]
rs2031616	0.92[EUR][1000 genomes]
rs2094231	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4919312	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933244	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4933750	0.86[EUR][1000 genomes]
rs6583845	0.86[EUR][1000 genomes]
rs6583850	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6583852	0.85[EUR][1000 genomes]
rs66468832	0.83[ASN][1000 genomes]
rs66536955	0.91[ASN][1000 genomes]
rs67759966	0.83[ASN][1000 genomes]
rs7068012	0.82[EUR][1000 genomes]
rs7069010	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7075749	0.83[ASN][1000 genomes]
rs7078801	0.83[EUR][1000 genomes]
rs7081789	0.86[EUR][1000 genomes]
rs7082214	0.92[EUR][1000 genomes]
rs7095772	0.84[EUR][1000 genomes]
rs7908826	0.92[EUR][1000 genomes]
rs7915463	0.84[EUR][1000 genomes]
rs7919095	0.83[EUR][1000 genomes]
rs7919589	0.84[EUR][1000 genomes]
rs7923502	0.86[EUR][1000 genomes]
rs835238	0.91[EUR][1000 genomes]
rs835247	0.92[EUR][1000 genomes]
rs9919491	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv551941	chr10:94670849-94782735	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv467435	chr10:94716313-94779550	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv551943	chr10:94716313-94779550	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94658000-94750000	Weak transcription	Aorta	Aorta
2	chr10:94662600-94748400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr10:94712600-94787800	Weak transcription	Left Ventricle	heart
4	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:94730800-94753400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:94730800-94773400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr10:94731600-94777200	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr10:94732600-94780800	Weak transcription	Psoas Muscle	Psoas
9	chr10:94732800-94750400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr10:94733200-94749400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:94733600-94750400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:94734000-94750400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr10:94734200-94748800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:94735000-94759200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr10:94736000-94753600	Weak transcription	Gastric	stomach
16	chr10:94736800-94748800	Weak transcription	K562	blood
17	chr10:94737800-94760000	Weak transcription	Primary B cells from cord blood	blood
18	chr10:94741400-94760800	Weak transcription	HUVEC	blood vessel

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