Variant report

Variant	rs7069010
Chromosome Location	chr10:94721905-94721906
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10509647	0.92[EUR][1000 genomes]
rs10882118	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs10882121	0.84[CEU][hapmap];0.90[GIH][hapmap];0.98[TSI][hapmap]
rs10882133	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882134	0.88[EUR][1000 genomes]
rs10882137	0.90[EUR][1000 genomes]
rs10882138	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11187186	1.00[CHB][hapmap]
rs11187193	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs11187212	0.83[EUR][1000 genomes]
rs11187226	0.92[EUR][1000 genomes]
rs11187262	1.00[CHB][hapmap]
rs11516919	0.88[GIH][hapmap];0.85[TSI][hapmap]
rs12415602	0.91[ASN][1000 genomes]
rs1326330	0.91[ASN][1000 genomes]
rs1339821	1.00[CHB][hapmap]
rs1409385	1.00[CHB][hapmap]
rs1409386	1.00[CHB][hapmap]
rs1998861	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2031616	0.84[EUR][1000 genomes]
rs2094231	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2901634	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs3740380	1.00[CHB][hapmap];0.94[CHD][hapmap];0.90[GIH][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap]
rs4508117	0.84[CEU][hapmap];0.90[GIH][hapmap];0.98[TSI][hapmap]
rs4919312	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4933244	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4933750	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4933755	0.83[EUR][1000 genomes]
rs6583845	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6583847	1.00[CHB][hapmap];0.94[CHD][hapmap];0.88[JPT][hapmap]
rs6583850	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6583852	0.92[EUR][1000 genomes]
rs66468832	0.91[ASN][1000 genomes]
rs66536955	0.83[ASN][1000 genomes]
rs67759966	0.91[ASN][1000 genomes]
rs7068012	0.87[EUR][1000 genomes]
rs7075749	0.91[ASN][1000 genomes]
rs7078801	0.89[EUR][1000 genomes]
rs7081789	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7081888	1.00[CHB][hapmap]
rs7082214	0.84[EUR][1000 genomes]
rs7085308	0.83[EUR][1000 genomes]
rs7087174	0.84[CEU][hapmap];0.90[GIH][hapmap];0.98[TSI][hapmap]
rs7094393	0.83[EUR][1000 genomes]
rs7095772	0.84[CEU][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs7904552	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs7906224	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap]
rs7907142	1.00[CHB][hapmap]
rs7908826	0.84[EUR][1000 genomes]
rs7910006	0.84[CEU][hapmap];0.90[GIH][hapmap];0.95[TSI][hapmap]
rs7914571	0.88[GIH][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs7915463	0.84[CEU][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs7916038	1.00[CHB][hapmap];0.90[GIH][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap]
rs7919095	0.87[EUR][1000 genomes]
rs7919589	0.88[EUR][1000 genomes]
rs7922067	1.00[CHB][hapmap]
rs7923502	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs835238	0.85[CEU][hapmap];0.95[GIH][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs835247	0.84[EUR][1000 genomes]
rs9919491	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv515937	chr10:94660133-94725508	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv467434	chr10:94668524-94725508	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv551940	chr10:94668524-94725508	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv551941	chr10:94670849-94782735	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv467435	chr10:94716313-94779550	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv551943	chr10:94716313-94779550	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94652600-94742400	Weak transcription	HSMMtube	muscle
2	chr10:94653200-94725200	Weak transcription	Fetal Lung	lung
3	chr10:94653400-94730200	Weak transcription	Fetal Brain Male	brain
4	chr10:94658000-94732400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:94658000-94750000	Weak transcription	Aorta	Aorta
6	chr10:94658600-94725800	Weak transcription	Lung	lung
7	chr10:94662600-94748400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr10:94667400-94733400	Weak transcription	Pancreas	Pancrea
9	chr10:94674800-94724600	Weak transcription	HSMM	muscle
10	chr10:94683400-94724400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:94687400-94724200	Weak transcription	NHLF	lung
12	chr10:94689200-94738000	Weak transcription	Fetal Thymus	thymus
13	chr10:94689800-94724600	Weak transcription	A549	lung
14	chr10:94690000-94730000	Weak transcription	Placenta	Placenta
15	chr10:94692800-94724400	Weak transcription	Small Intestine	intestine
16	chr10:94699400-94728600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr10:94699800-94722800	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr10:94700000-94723000	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr10:94700400-94722800	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr10:94703000-94731800	Weak transcription	Spleen	Spleen
21	chr10:94704600-94731800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr10:94706600-94731600	Weak transcription	Hela-S3	cervix
23	chr10:94707400-94735400	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr10:94708200-94732400	Weak transcription	Colon Smooth Muscle	Colon
25	chr10:94709000-94731800	Weak transcription	Duodenum Mucosa	Duodenum
26	chr10:94709000-94735400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr10:94710400-94741400	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr10:94711200-94730000	Weak transcription	K562	blood
29	chr10:94712600-94787800	Weak transcription	Left Ventricle	heart
30	chr10:94713000-94728800	Weak transcription	Primary B cells from peripheral blood	blood
31	chr10:94713200-94731600	Weak transcription	Fetal Intestine Small	intestine
32	chr10:94713200-94731800	Weak transcription	Psoas Muscle	Psoas
33	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr10:94713400-94723800	Weak transcription	Brain Angular Gyrus	brain
35	chr10:94713400-94730800	Weak transcription	Adipose Nuclei	Adipose
36	chr10:94713400-94731000	Weak transcription	Fetal Muscle Trunk	muscle
37	chr10:94713400-94732000	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr10:94713400-94738600	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr10:94714000-94731600	Weak transcription	Thymus	Thymus
40	chr10:94714200-94732200	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr10:94714800-94732000	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr10:94714800-94733200	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr10:94715000-94728800	Weak transcription	Fetal Muscle Leg	muscle
44	chr10:94715000-94730400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr10:94715000-94732400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr10:94715600-94734800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr10:94716800-94731200	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr10:94717400-94729800	Weak transcription	Dnd41	blood
49	chr10:94718200-94726600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr10:94718200-94729800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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