Variant report

Variant	rs7081888
Chromosome Location	chr10:94764660-94764661
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94762262..94763856-chr10:94764129..94766422,2	K562	blood:
2	chr10:94753771..94757265-chr10:94760841..94764676,6	K562	blood:

Variant related genes	Relation type
ENSG00000138190	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10882118	1.00[CHB][hapmap]
rs11187186	1.00[CHB][hapmap]
rs11187193	1.00[CHB][hapmap]
rs11187240	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187262	1.00[CHB][hapmap]
rs1339821	1.00[CHB][hapmap]
rs1409385	1.00[CHB][hapmap]
rs1409386	1.00[CHB][hapmap]
rs2901634	1.00[CHB][hapmap]
rs3740380	1.00[CHB][hapmap]
rs4933244	1.00[CHB][hapmap]
rs6583847	1.00[CHB][hapmap]
rs66921281	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7071682	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7904552	1.00[CHB][hapmap]
rs7906224	1.00[CHB][hapmap]
rs7907142	1.00[CHB][hapmap]
rs7916038	1.00[CHB][hapmap]
rs7916994	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7922067	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7923502	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv551941	chr10:94670849-94782735	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv467435	chr10:94716313-94779550	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv551943	chr10:94716313-94779550	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94712600-94787800	Weak transcription	Left Ventricle	heart
2	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:94730800-94773400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:94731600-94777200	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr10:94732600-94780800	Weak transcription	Psoas Muscle	Psoas
6	chr10:94749000-94774000	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:94750000-94790200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr10:94750800-94774000	Weak transcription	Adipose Nuclei	Adipose
9	chr10:94750800-94794600	Weak transcription	Small Intestine	intestine
10	chr10:94751800-94769200	Weak transcription	K562	blood
11	chr10:94754000-94772600	Weak transcription	Pancreas	Pancrea
12	chr10:94754400-94765800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr10:94754400-94785000	Weak transcription	Dnd41	blood
14	chr10:94756200-94774000	Weak transcription	Primary B cells from peripheral blood	blood
15	chr10:94756800-94776200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr10:94757400-94784000	Weak transcription	Fetal Muscle Leg	muscle
17	chr10:94757400-94784400	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr10:94757400-94786000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr10:94757800-94773800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr10:94757800-94776000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr10:94757800-94777200	Weak transcription	HSMM	muscle
22	chr10:94757800-94784000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr10:94758000-94774000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr10:94758200-94766000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr10:94758200-94774000	Weak transcription	Liver	Liver
26	chr10:94761000-94774000	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr10:94762200-94791400	Weak transcription	Placenta	Placenta
28	chr10:94762400-94780600	Weak transcription	Primary B cells from cord blood	blood
29	chr10:94763200-94773400	Weak transcription	Primary T cells from cord blood	blood
30	chr10:94763400-94774000	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr10:94763800-94764800	Enhancers	A549	lung
32	chr10:94763800-94767200	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr10:94763800-94778800	Weak transcription	HUVEC	blood vessel
34	chr10:94764200-94764800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr10:94764200-94775800	Weak transcription	Fetal Intestine Small	intestine

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