Variant report

Variant	rs7906224
Chromosome Location	chr10:94628274-94628275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94610883..94613805-chr10:94625672..94628643,2	MCF-7	breast:
2	chr10:94621432..94625440-chr10:94626833..94628903,3	K562	blood:
3	chr10:94608111..94609814-chr10:94626111..94628988,2	K562	blood:
4	chr10:94590338..94592661-chr10:94626980..94628778,2	K562	blood:

Variant related genes	Relation type
ENSG00000138190	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10509647	0.80[EUR][1000 genomes]
rs10748583	0.81[ASN][1000 genomes]
rs10882118	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882121	0.84[ASW][hapmap];0.96[CEU][hapmap];0.88[GIH][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs10882122	0.97[EUR][1000 genomes]
rs11187186	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11187192	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11187193	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11187197	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187262	1.00[CHB][hapmap]
rs11516919	0.85[CEU][hapmap];0.85[GIH][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes]
rs12769058	0.98[EUR][1000 genomes]
rs1339821	1.00[CHB][hapmap]
rs1409385	1.00[CHB][hapmap]
rs1409386	1.00[CHB][hapmap]
rs1964154	0.97[ASN][1000 genomes]
rs2094231	0.82[EUR][1000 genomes]
rs2422060	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2901633	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2901634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3740380	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4417182	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4508117	0.84[ASW][hapmap];0.96[CEU][hapmap];0.88[GIH][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.98[EUR][1000 genomes]
rs4933244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4933748	0.95[EUR][1000 genomes]
rs4933750	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs55944050	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583845	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6583847	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs6583850	0.84[EUR][1000 genomes]
rs6583852	0.80[EUR][1000 genomes]
rs7068012	0.82[EUR][1000 genomes]
rs7078801	0.82[EUR][1000 genomes]
rs7081789	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7081888	1.00[CHB][hapmap]
rs7087174	0.84[ASW][hapmap];0.96[CEU][hapmap];0.88[GIH][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs7095772	0.96[CEU][hapmap];0.88[GIH][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes]
rs7097943	0.97[EUR][1000 genomes]
rs7904552	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907142	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7908179	0.92[EUR][1000 genomes]
rs7910006	0.84[ASW][hapmap];0.96[CEU][hapmap];0.88[GIH][hapmap];0.98[TSI][hapmap];0.85[YRI][hapmap];0.97[EUR][1000 genomes]
rs7911519	0.83[EUR][1000 genomes]
rs7913949	0.95[EUR][1000 genomes]
rs7914571	0.85[CEU][hapmap];0.85[GIH][hapmap];0.91[TSI][hapmap]
rs7915463	0.96[CEU][hapmap];0.88[GIH][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes]
rs7916038	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.96[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7919095	0.82[EUR][1000 genomes]
rs7919589	0.84[EUR][1000 genomes]
rs7922067	1.00[CHB][hapmap]
rs7923502	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs835238	0.91[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041805	chr10:94624759-94699623	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94619800-94628800	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr10:94619800-94632800	Weak transcription	Primary B cells from peripheral blood	blood
3	chr10:94620000-94657600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr10:94622400-94632400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:94624400-94646000	Weak transcription	Fetal Intestine Small	intestine
6	chr10:94624600-94628600	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr10:94624600-94632600	Weak transcription	Primary T cells from cord blood	blood
8	chr10:94624600-94632600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr10:94624600-94633000	Weak transcription	Primary B cells from cord blood	blood
10	chr10:94624800-94632600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:94627000-94628800	Enhancers	A549	lung
12	chr10:94627200-94628800	Enhancers	HUVEC	blood vessel
13	chr10:94627200-94636000	Weak transcription	K562	blood
14	chr10:94627400-94633000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr10:94627600-94629000	Enhancers	Hela-S3	cervix
16	chr10:94628000-94628400	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr10:94628200-94628800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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