Variant report

Variant	rs10748583
Chromosome Location	chr10:94576592-94576593
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94576177..94578634-chr10:94580868..94583039,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10748584	0.95[CEU][hapmap];0.89[GIH][hapmap];0.97[TSI][hapmap];0.82[EUR][1000 genomes]
rs10786059	0.90[CEU][hapmap]
rs10786060	0.90[CEU][hapmap];0.89[GIH][hapmap];0.90[TSI][hapmap]
rs10882115	0.97[EUR][1000 genomes]
rs10882117	0.95[CEU][hapmap];0.89[GIH][hapmap];0.97[TSI][hapmap];0.83[EUR][1000 genomes]
rs10882118	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10882120	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs10882123	0.95[CEU][hapmap];0.89[GIH][hapmap];0.97[TSI][hapmap];0.81[EUR][1000 genomes]
rs10882125	0.90[CEU][hapmap];0.89[GIH][hapmap];0.90[TSI][hapmap]
rs10882129	0.90[CEU][hapmap];0.89[GIH][hapmap];0.90[TSI][hapmap]
rs11187186	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11187192	0.84[ASN][1000 genomes]
rs11187193	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11187197	0.81[ASN][1000 genomes]
rs1409385	1.00[CHB][hapmap];0.80[GIH][hapmap]
rs1409386	1.00[CHB][hapmap];0.80[GIH][hapmap]
rs1571034	0.84[GIH][hapmap];0.90[TSI][hapmap]
rs1964154	0.85[ASN][1000 genomes]
rs1987017	0.95[CEU][hapmap];0.84[GIH][hapmap];0.97[TSI][hapmap];0.81[EUR][1000 genomes]
rs2422060	0.91[ASN][1000 genomes]
rs2490736	0.84[EUR][1000 genomes]
rs2490739	0.95[CEU][hapmap];0.96[GIH][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes]
rs2490741	0.95[CEU][hapmap];0.93[GIH][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes]
rs2901633	0.91[ASN][1000 genomes]
rs2901634	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3740380	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4284324	0.83[EUR][1000 genomes]
rs4417182	0.91[ASN][1000 genomes]
rs4933244	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4933744	0.85[CEU][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4933753	0.90[CEU][hapmap];0.89[GIH][hapmap];0.90[TSI][hapmap]
rs55944050	0.81[ASN][1000 genomes]
rs6583847	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs7068232	0.95[CEU][hapmap];0.89[GIH][hapmap];0.97[TSI][hapmap];0.81[EUR][1000 genomes]
rs7081888	1.00[CHB][hapmap]
rs7904552	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs7906224	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7907142	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7916038	1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7923502	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs9633694	0.95[CEU][hapmap];0.89[GIH][hapmap];0.97[TSI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10748583	DEGS2	trans	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94573800-94580400	Enhancers	HUVEC	blood vessel
2	chr10:94574400-94581400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:94575000-94581200	Weak transcription	K562	blood
4	chr10:94575200-94577000	Enhancers	NHLF	lung
5	chr10:94575200-94581400	Weak transcription	Adipose Nuclei	Adipose
6	chr10:94575800-94577600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:94576200-94581400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:94576200-94581600	Weak transcription	NHDF-Ad	bronchial
9	chr10:94576400-94579600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:94576400-94581400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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