Variant report

Variant	rs7923502
Chromosome Location	chr10:94665431-94665432
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr10:94665207-94665787	U2OS	brain:	n/a	n/a

Variant related genes	Relation type
EXOC6	TF binding region

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10509647	0.95[EUR][1000 genomes]
rs10882118	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs10882121	0.96[CEU][hapmap];0.97[GIH][hapmap];0.98[TSI][hapmap];0.82[EUR][1000 genomes]
rs10882122	0.82[EUR][1000 genomes]
rs10882133	0.86[EUR][1000 genomes]
rs10882134	0.81[EUR][1000 genomes]
rs10882137	0.84[EUR][1000 genomes]
rs10882138	0.86[EUR][1000 genomes]
rs11187186	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11187192	0.85[EUR][1000 genomes]
rs11187193	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs11187197	0.85[EUR][1000 genomes]
rs11187212	0.92[EUR][1000 genomes]
rs11187226	0.83[EUR][1000 genomes]
rs11187262	1.00[CHB][hapmap]
rs11516919	0.85[CEU][hapmap];0.95[GIH][hapmap];0.85[TSI][hapmap]
rs12769058	0.84[EUR][1000 genomes]
rs1339821	1.00[CHB][hapmap]
rs1409385	1.00[CHB][hapmap]
rs1409386	1.00[CHB][hapmap]
rs1998861	0.86[EUR][1000 genomes]
rs2094231	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2422060	0.81[EUR][1000 genomes]
rs2901633	0.84[EUR][1000 genomes]
rs2901634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs3740380	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.81[EUR][1000 genomes]
rs4417182	0.80[EUR][1000 genomes]
rs4508117	0.96[CEU][hapmap];0.97[GIH][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes]
rs4919312	0.84[EUR][1000 genomes]
rs4933244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4933748	0.80[EUR][1000 genomes]
rs4933750	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4933755	0.91[EUR][1000 genomes]
rs55944050	0.86[EUR][1000 genomes]
rs6583845	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6583847	1.00[CHB][hapmap];0.94[CHD][hapmap]
rs6583850	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6583852	0.95[EUR][1000 genomes]
rs7068012	0.97[EUR][1000 genomes]
rs7069010	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7078801	0.97[EUR][1000 genomes]
rs7081789	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7081888	1.00[CHB][hapmap]
rs7085308	0.92[EUR][1000 genomes]
rs7087174	0.96[CEU][hapmap];0.97[GIH][hapmap];0.98[TSI][hapmap];0.82[EUR][1000 genomes]
rs7094393	0.92[EUR][1000 genomes]
rs7095772	0.96[CEU][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs7097943	0.85[EUR][1000 genomes]
rs7904552	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs7906224	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs7907142	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs7910006	0.96[CEU][hapmap];0.97[GIH][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs7913949	0.81[EUR][1000 genomes]
rs7914571	0.85[CEU][hapmap];0.95[GIH][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes]
rs7915463	0.96[CEU][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs7916038	0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap]
rs7919095	0.97[EUR][1000 genomes]
rs7919589	0.98[EUR][1000 genomes]
rs7922067	1.00[CHB][hapmap]
rs835238	0.87[GIH][hapmap];0.93[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041805	chr10:94624759-94699623	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1039122	chr10:94636267-94693706	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1039261	chr10:94659515-94706633	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	esv1847300	chr10:94660133-94670849	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv515937	chr10:94660133-94725508	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
8	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94652400-94672600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr10:94652400-94674200	Weak transcription	Psoas Muscle	Psoas
3	chr10:94652400-94681000	Weak transcription	Fetal Stomach	stomach
4	chr10:94652400-94717400	Weak transcription	Esophagus	oesophagus
5	chr10:94652600-94667000	Weak transcription	Pancreas	Pancrea
6	chr10:94652600-94669600	Weak transcription	Left Ventricle	heart
7	chr10:94652600-94680000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:94652600-94680000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr10:94652600-94680200	Weak transcription	Brain Anterior Caudate	brain
10	chr10:94652600-94688800	Weak transcription	Placenta	Placenta
11	chr10:94652600-94712400	Weak transcription	Brain Angular Gyrus	brain
12	chr10:94652600-94718000	Weak transcription	Ovary	ovary
13	chr10:94652600-94742400	Weak transcription	HSMMtube	muscle
14	chr10:94652800-94666800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr10:94652800-94671200	Weak transcription	Fetal Heart	heart
16	chr10:94652800-94706600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr10:94653000-94669800	Weak transcription	Hela-S3	cervix
18	chr10:94653200-94725200	Weak transcription	Fetal Lung	lung
19	chr10:94653400-94730200	Weak transcription	Fetal Brain Male	brain
20	chr10:94654600-94680200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr10:94654600-94714600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr10:94655000-94673200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr10:94655000-94680200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:94655200-94667000	Weak transcription	Fetal Intestine Large	intestine
25	chr10:94655200-94680200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr10:94655200-94689200	Weak transcription	Brain Germinal Matrix	brain
27	chr10:94655400-94672800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr10:94655600-94667800	Weak transcription	Fetal Intestine Small	intestine
29	chr10:94655600-94688800	Weak transcription	Fetal Thymus	thymus
30	chr10:94656400-94680600	Weak transcription	Fetal Kidney	kidney
31	chr10:94656800-94674000	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr10:94657200-94680200	Weak transcription	Adipose Nuclei	Adipose
33	chr10:94657400-94673800	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr10:94657800-94667000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:94657800-94669600	Weak transcription	K562	blood
36	chr10:94657800-94674200	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr10:94657800-94680200	Weak transcription	Fetal Muscle Trunk	muscle
38	chr10:94658000-94688600	Weak transcription	Stomach Smooth Muscle	stomach
39	chr10:94658000-94688800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr10:94658000-94732400	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr10:94658000-94750000	Weak transcription	Aorta	Aorta
42	chr10:94658200-94667200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr10:94658200-94669600	Weak transcription	Fetal Muscle Leg	muscle
44	chr10:94658200-94682800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr10:94658600-94667200	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr10:94658600-94725800	Weak transcription	Lung	lung
47	chr10:94660200-94667000	Weak transcription	Primary B cells from peripheral blood	blood
48	chr10:94660400-94669200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr10:94661800-94666600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr10:94661800-94672400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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