Variant report

Variant	rs10882118
Chromosome Location	chr10:94613638-94613639
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94606549..94609808-chr10:94611902..94615448,5	K562	blood:
2	chr10:94613465..94615830-chr10:94636991..94639878,2	K562	blood:
3	chr10:94610883..94613805-chr10:94625672..94628643,2	MCF-7	breast:
4	chr10:94447842..94450482-chr10:94613135..94614860,2	K562	blood:

Variant related genes	Relation type
ENSG00000138190	Chromatin interaction
ENSG00000225118	Chromatin interaction
ENSG00000152804	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10748583	0.91[ASN][1000 genomes]
rs10882121	0.96[CEU][hapmap];0.98[EUR][1000 genomes]
rs10882122	0.98[EUR][1000 genomes]
rs11187186	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11187192	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11187193	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11187197	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11187262	1.00[CHB][hapmap]
rs11516919	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs12769058	0.97[EUR][1000 genomes]
rs1409385	1.00[CHB][hapmap]
rs1409386	1.00[CHB][hapmap]
rs1964154	0.87[ASN][1000 genomes]
rs2094231	0.81[EUR][1000 genomes]
rs2422060	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901633	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740380	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4417182	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4508117	0.96[CEU][hapmap];0.97[EUR][1000 genomes]
rs4933244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4933748	0.96[EUR][1000 genomes]
rs4933750	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs55944050	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6583845	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6583847	1.00[CHB][hapmap]
rs6583850	0.83[EUR][1000 genomes]
rs7068012	0.81[EUR][1000 genomes]
rs7078801	0.81[EUR][1000 genomes]
rs7081789	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7081888	1.00[CHB][hapmap]
rs7087174	0.96[CEU][hapmap];0.98[EUR][1000 genomes]
rs7095772	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs7097943	0.96[EUR][1000 genomes]
rs7904552	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7906224	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7907142	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7908179	0.93[EUR][1000 genomes]
rs7910006	0.96[CEU][hapmap];0.81[YRI][hapmap];0.98[EUR][1000 genomes]
rs7911519	0.83[EUR][1000 genomes]
rs7913949	0.97[EUR][1000 genomes]
rs7914571	0.85[CEU][hapmap]
rs7915463	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs7916038	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919095	0.81[EUR][1000 genomes]
rs7919589	0.82[EUR][1000 genomes]
rs7923502	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94609200-94614800	Weak transcription	Lung	lung
2	chr10:94609200-94621000	Weak transcription	Pancreas	Pancrea
3	chr10:94609600-94622400	Weak transcription	Thymus	Thymus
4	chr10:94609800-94619000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr10:94610200-94614400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr10:94610200-94614600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr10:94610400-94614000	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr10:94610400-94614000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr10:94610600-94614200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:94611000-94615400	Weak transcription	HUVEC	blood vessel

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