Variant report

Variant	rs7068012
Chromosome Location	chr10:94677463-94677464
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10509647	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10748585	0.96[ASN][1000 genomes]
rs10786058	0.96[ASN][1000 genomes]
rs10786059	0.93[ASN][1000 genomes]
rs10786060	0.96[ASN][1000 genomes]
rs10786061	0.96[ASN][1000 genomes]
rs10786063	0.93[ASN][1000 genomes]
rs10882118	0.81[EUR][1000 genomes]
rs10882121	0.83[EUR][1000 genomes]
rs10882122	0.82[EUR][1000 genomes]
rs10882125	0.96[ASN][1000 genomes]
rs10882126	0.96[ASN][1000 genomes]
rs10882127	0.96[ASN][1000 genomes]
rs10882129	0.96[ASN][1000 genomes]
rs10882130	0.92[ASN][1000 genomes]
rs10882132	0.86[ASN][1000 genomes]
rs10882133	0.82[EUR][1000 genomes]
rs10882134	0.81[EUR][1000 genomes]
rs10882135	0.83[ASN][1000 genomes]
rs10882136	0.84[ASN][1000 genomes]
rs10882137	0.84[EUR][1000 genomes]
rs10882138	0.82[EUR][1000 genomes]
rs11187192	0.82[EUR][1000 genomes]
rs11187193	0.82[EUR][1000 genomes]
rs11187197	0.82[EUR][1000 genomes]
rs11187209	0.96[ASN][1000 genomes]
rs11187212	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11187226	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12251276	0.80[ASN][1000 genomes]
rs12769058	0.84[EUR][1000 genomes]
rs1571034	0.83[ASN][1000 genomes]
rs1998861	0.82[EUR][1000 genomes]
rs2031616	0.80[EUR][1000 genomes]
rs2094231	0.93[EUR][1000 genomes]
rs2274374	0.94[ASN][1000 genomes]
rs2901633	0.81[EUR][1000 genomes]
rs2901634	0.80[EUR][1000 genomes]
rs4508117	0.84[EUR][1000 genomes]
rs4918435	0.84[ASN][1000 genomes]
rs4919312	0.81[EUR][1000 genomes]
rs4933244	0.97[EUR][1000 genomes]
rs4933245	0.96[ASN][1000 genomes]
rs4933246	0.96[ASN][1000 genomes]
rs4933748	0.81[EUR][1000 genomes]
rs4933750	0.97[EUR][1000 genomes]
rs4933751	0.96[ASN][1000 genomes]
rs4933753	0.96[ASN][1000 genomes]
rs4933754	0.96[ASN][1000 genomes]
rs4933755	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4933756	0.94[ASN][1000 genomes]
rs55944050	0.82[EUR][1000 genomes]
rs6583845	0.97[EUR][1000 genomes]
rs6583850	0.95[EUR][1000 genomes]
rs6583852	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7069010	0.87[EUR][1000 genomes]
rs7078801	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7081789	0.97[EUR][1000 genomes]
rs7082214	0.80[EUR][1000 genomes]
rs7085308	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7087174	0.83[EUR][1000 genomes]
rs7094393	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7095772	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7097943	0.85[EUR][1000 genomes]
rs7904552	0.82[EUR][1000 genomes]
rs7906224	0.82[EUR][1000 genomes]
rs7908826	0.80[EUR][1000 genomes]
rs7910006	0.82[EUR][1000 genomes]
rs7913949	0.82[EUR][1000 genomes]
rs7914459	0.91[ASN][1000 genomes]
rs7914571	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7915463	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7919095	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7919589	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7923502	0.97[EUR][1000 genomes]
rs835247	0.80[EUR][1000 genomes]
rs9633696	0.93[ASN][1000 genomes]
rs9645558	0.94[ASN][1000 genomes]
rs980203	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041805	chr10:94624759-94699623	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1039122	chr10:94636267-94693706	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1039261	chr10:94659515-94706633	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv515937	chr10:94660133-94725508	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv467434	chr10:94668524-94725508	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv551940	chr10:94668524-94725508	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv551941	chr10:94670849-94782735	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94652400-94681000	Weak transcription	Fetal Stomach	stomach
2	chr10:94652400-94717400	Weak transcription	Esophagus	oesophagus
3	chr10:94652600-94680000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr10:94652600-94680000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr10:94652600-94680200	Weak transcription	Brain Anterior Caudate	brain
6	chr10:94652600-94688800	Weak transcription	Placenta	Placenta
7	chr10:94652600-94712400	Weak transcription	Brain Angular Gyrus	brain
8	chr10:94652600-94718000	Weak transcription	Ovary	ovary
9	chr10:94652600-94742400	Weak transcription	HSMMtube	muscle
10	chr10:94652800-94706600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr10:94653200-94725200	Weak transcription	Fetal Lung	lung
12	chr10:94653400-94730200	Weak transcription	Fetal Brain Male	brain
13	chr10:94654600-94680200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr10:94654600-94714600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr10:94655000-94680200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:94655200-94680200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr10:94655200-94689200	Weak transcription	Brain Germinal Matrix	brain
18	chr10:94655600-94688800	Weak transcription	Fetal Thymus	thymus
19	chr10:94656400-94680600	Weak transcription	Fetal Kidney	kidney
20	chr10:94657200-94680200	Weak transcription	Adipose Nuclei	Adipose
21	chr10:94657800-94680200	Weak transcription	Fetal Muscle Trunk	muscle
22	chr10:94658000-94688600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr10:94658000-94688800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr10:94658000-94732400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr10:94658000-94750000	Weak transcription	Aorta	Aorta
26	chr10:94658200-94682800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr10:94658600-94725800	Weak transcription	Lung	lung
28	chr10:94661800-94688800	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr10:94662400-94680000	Weak transcription	Fetal Brain Female	brain
30	chr10:94662400-94688400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr10:94662600-94680200	Weak transcription	A549	lung
32	chr10:94662600-94689400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr10:94662600-94748400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr10:94662800-94688200	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr10:94664200-94680600	Weak transcription	Liver	Liver
36	chr10:94664400-94693800	Weak transcription	HepG2	liver
37	chr10:94664600-94714600	Weak transcription	Rectal Smooth Muscle	rectum
38	chr10:94667200-94680200	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr10:94667400-94680200	Weak transcription	Fetal Intestine Large	intestine
40	chr10:94667400-94688000	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr10:94667400-94688600	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr10:94667400-94733400	Weak transcription	Pancreas	Pancrea
43	chr10:94670200-94678800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr10:94670200-94679400	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr10:94670600-94679800	Weak transcription	Primary T cells from cord blood	blood
46	chr10:94670800-94680800	Weak transcription	Small Intestine	intestine
47	chr10:94672000-94679800	Weak transcription	Primary B cells from peripheral blood	blood
48	chr10:94672000-94716000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr10:94672600-94680200	Weak transcription	Right Ventricle	heart
50	chr10:94672800-94682600	Weak transcription	Left Ventricle	heart

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