Variant report

Variant	rs2422060
Chromosome Location	chr10:94601452-94601453
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94601204..94605771-chr10:94608144..94610303,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138190	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10748583	0.91[ASN][1000 genomes]
rs10882118	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882121	0.95[EUR][1000 genomes]
rs10882122	0.94[EUR][1000 genomes]
rs11187186	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11187192	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11187193	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11187197	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11516919	0.91[EUR][1000 genomes]
rs12769058	0.94[EUR][1000 genomes]
rs1964154	0.87[ASN][1000 genomes]
rs2901633	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901634	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740380	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4417182	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4508117	0.94[EUR][1000 genomes]
rs4933244	0.81[EUR][1000 genomes]
rs4933748	0.93[EUR][1000 genomes]
rs4933750	0.81[EUR][1000 genomes]
rs55944050	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6583845	0.81[EUR][1000 genomes]
rs7081789	0.81[EUR][1000 genomes]
rs7087174	0.95[EUR][1000 genomes]
rs7097943	0.93[EUR][1000 genomes]
rs7904552	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7906224	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7907142	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7908179	0.90[EUR][1000 genomes]
rs7910006	0.94[EUR][1000 genomes]
rs7911519	0.86[EUR][1000 genomes]
rs7913949	0.97[EUR][1000 genomes]
rs7916038	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923502	0.81[EUR][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94591600-94602800	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr10:94591600-94602800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr10:94592200-94605600	Weak transcription	Primary B cells from peripheral blood	blood
4	chr10:94596800-94602400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr10:94596800-94604400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr10:94596800-94607800	Weak transcription	HSMMtube	muscle
7	chr10:94597400-94602600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr10:94598200-94602800	Weak transcription	Dnd41	blood
9	chr10:94598600-94607200	Weak transcription	Primary T cells from cord blood	blood
10	chr10:94599200-94603000	Weak transcription	Placenta	Placenta
11	chr10:94599400-94602200	Weak transcription	Adipose Nuclei	Adipose
12	chr10:94599400-94607200	Weak transcription	Osteobl	bone
13	chr10:94599400-94607400	Weak transcription	Spleen	Spleen
14	chr10:94599600-94602200	Weak transcription	Psoas Muscle	Psoas
15	chr10:94599600-94602200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr10:94599600-94602200	Weak transcription	HepG2	liver
17	chr10:94599600-94602400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:94599600-94602600	Weak transcription	Fetal Muscle Leg	muscle
19	chr10:94599600-94602600	Weak transcription	Hela-S3	cervix
20	chr10:94599600-94603000	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr10:94599600-94604200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr10:94599600-94606600	Weak transcription	Lung	lung
23	chr10:94599600-94607600	Weak transcription	Fetal Muscle Trunk	muscle
24	chr10:94599800-94602400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr10:94599800-94602600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:94599800-94602800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr10:94599800-94602800	Weak transcription	K562	blood
28	chr10:94600000-94601800	Genic enhancers	HUVEC	blood vessel
29	chr10:94600000-94602600	Weak transcription	A549	lung
30	chr10:94600600-94607800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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