Variant report

Variant	rs2490741
Chromosome Location	chr10:94594565-94594566
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94590260..94593041-chr10:94593935..94595918,2	K562	blood:

Variant related genes	Relation type
ENSG00000138190	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10748583	0.85[EUR][1000 genomes]
rs10748584	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10786056	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10786058	0.80[EUR][1000 genomes]
rs10786059	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10786060	0.95[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs10882115	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10882117	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882120	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882121	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10882122	0.96[ASN][1000 genomes]
rs10882123	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882125	0.95[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.92[TSI][hapmap]
rs10882129	0.95[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs11516919	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12769058	0.93[ASN][1000 genomes]
rs1409385	0.82[GIH][hapmap]
rs1409386	0.82[GIH][hapmap]
rs1571034	0.84[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs1964154	0.84[EUR][1000 genomes]
rs1967817	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1987017	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2246696	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2490736	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2490739	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4284324	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4508117	1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs4933240	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4933744	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs4933748	0.97[ASN][1000 genomes]
rs4933753	0.95[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs7068232	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7087174	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7095772	1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap]
rs7097943	0.92[ASN][1000 genomes]
rs7908179	0.98[ASN][1000 genomes]
rs7910006	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7913949	0.98[ASN][1000 genomes]
rs7914571	1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap]
rs7915463	0.93[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap]
rs835238	1.00[CHB][hapmap]
rs9633694	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94589000-94598000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:94589400-94599200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr10:94591000-94598800	Weak transcription	Right Atrium	heart
4	chr10:94591600-94597000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:94591600-94602800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr10:94591600-94602800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr10:94592200-94605600	Weak transcription	Primary B cells from peripheral blood	blood
8	chr10:94592800-94596000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:94593000-94594600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:94593000-94597200	Weak transcription	Primary T cells from cord blood	blood
11	chr10:94593000-94597200	Weak transcription	Placenta	Placenta
12	chr10:94593200-94595400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr10:94593200-94596000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr10:94593200-94596200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr10:94593200-94597000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr10:94593400-94598600	Weak transcription	Lung	lung
17	chr10:94593600-94595000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:94593800-94596400	Transcr. at gene 5' and 3'	HUVEC	blood vessel
19	chr10:94594000-94594600	Active TSS	Ovary	ovary
20	chr10:94594000-94595600	Active TSS	Skeletal Muscle Female	skeletal muscle
21	chr10:94594000-94595600	Enhancers	NH-A	brain
22	chr10:94594000-94597800	Active TSS	Skeletal Muscle Male	skeletal muscle
23	chr10:94594000-94598000	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr10:94594200-94594600	Weak transcription	NHLF	lung
25	chr10:94594200-94595600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:94594200-94595800	Active TSS	Psoas Muscle	Psoas
27	chr10:94594200-94596400	Active TSS	Fetal Muscle Trunk	muscle
28	chr10:94594200-94596600	Active TSS	Fetal Muscle Leg	muscle
29	chr10:94594200-94596600	Active TSS	HSMMtube	muscle
30	chr10:94594400-94594600	Enhancers	K562	blood
31	chr10:94594400-94594800	Active TSS	HSMM	muscle
32	chr10:94594400-94595000	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr10:94594400-94595200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
34	chr10:94594400-94595200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
35	chr10:94594400-94598600	Weak transcription	Adipose Nuclei	Adipose

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