Variant report

Variant	rs2490739
Chromosome Location	chr10:94597905-94597906
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94595494..94597932-chr10:94606791..94609350,3	MCF-7	breast:
2	chr10:94594344..94597237-chr10:94597831..94600212,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138190	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10748583	0.85[EUR][1000 genomes]
rs10748584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10786056	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10786058	0.80[EUR][1000 genomes]
rs10786059	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10786060	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs10882115	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882117	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882120	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882121	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10882122	0.97[ASN][1000 genomes]
rs10882123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10882125	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.92[TSI][hapmap]
rs10882129	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs11516919	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12769058	0.92[ASN][1000 genomes]
rs1409385	0.80[GIH][hapmap]
rs1409386	0.80[GIH][hapmap]
rs1571034	0.84[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs1964154	0.84[EUR][1000 genomes]
rs1967817	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1987017	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2246696	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2490736	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490741	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4284324	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4508117	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs4933240	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4933744	0.89[GIH][hapmap];0.87[TSI][hapmap]
rs4933748	0.96[ASN][1000 genomes]
rs4933753	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs7068232	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7087174	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7095772	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap]
rs7097943	0.91[ASN][1000 genomes]
rs7908179	0.97[ASN][1000 genomes]
rs7910006	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7913949	0.97[ASN][1000 genomes]
rs7914571	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs7915463	0.93[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap]
rs835238	1.00[CHB][hapmap];0.81[CHD][hapmap]
rs9633694	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94589000-94598000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:94589400-94599200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr10:94591000-94598800	Weak transcription	Right Atrium	heart
4	chr10:94591600-94602800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr10:94591600-94602800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr10:94592200-94605600	Weak transcription	Primary B cells from peripheral blood	blood
7	chr10:94593400-94598600	Weak transcription	Lung	lung
8	chr10:94594000-94598000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr10:94594400-94598600	Weak transcription	Adipose Nuclei	Adipose
10	chr10:94594600-94599000	Weak transcription	Ovary	ovary
11	chr10:94595400-94598800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:94595400-94599000	Weak transcription	Osteobl	bone
13	chr10:94595400-94599200	Weak transcription	A549	lung
14	chr10:94595600-94599000	Weak transcription	Hela-S3	cervix
15	chr10:94595600-94599000	Weak transcription	NHLF	lung
16	chr10:94596000-94598800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:94596200-94598000	Weak transcription	Psoas Muscle	Psoas
18	chr10:94596400-94598400	Genic enhancers	HUVEC	blood vessel
19	chr10:94596800-94602400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr10:94596800-94604400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr10:94596800-94607800	Weak transcription	HSMMtube	muscle
22	chr10:94597000-94599000	Genic enhancers	K562	blood
23	chr10:94597000-94599800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr10:94597200-94598200	Enhancers	Dnd41	blood
25	chr10:94597200-94598600	Strong transcription	Primary T cells from cord blood	blood
26	chr10:94597200-94599200	Enhancers	Placenta	Placenta
27	chr10:94597200-94599600	Enhancers	Fetal Muscle Leg	muscle
28	chr10:94597200-94599800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr10:94597400-94598200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
30	chr10:94597400-94602600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr10:94597600-94598600	Weak transcription	Fetal Muscle Trunk	muscle
32	chr10:94597600-94599000	Enhancers	HepG2	liver
33	chr10:94597800-94598000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
34	chr10:94597800-94598200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr10:94597800-94598200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
36	chr10:94597800-94598800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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