Variant report

Variant	rs4919594
Chromosome Location	chr10:94823596-94823597
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SUZ12	chr10:94819717-94824643	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:94822689..94825636-chr10:94825703..94828168,2	K562	blood:
2	chr10:94815612..94818000-chr10:94823407..94825360,2	MCF-7	breast:
3	chr10:94818208..94820843-chr10:94822190..94823877,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000226425	TF binding region
ENSG00000226425	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10748589	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10786065	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10786066	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10786067	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11812460	0.84[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12256889	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1409385	0.86[CEU][hapmap]
rs1409386	0.86[CEU][hapmap]
rs3736936	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4411227	0.85[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4568938	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7068500	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7096857	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7895716	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8211	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs835273	0.87[ASN][1000 genomes]
rs835278	0.86[ASN][1000 genomes]
rs856534	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802015	chr10:94811983-94839960	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv895899	chr10:94818382-94836435	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94811800-94825000	Weak transcription	HepG2	liver
2	chr10:94819600-94823600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
3	chr10:94819800-94823600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
4	chr10:94819800-94827800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:94820000-94823600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
6	chr10:94821600-94823600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:94822000-94826800	Weak transcription	Dnd41	blood
8	chr10:94822400-94823600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
9	chr10:94822400-94823600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
10	chr10:94822400-94824000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
11	chr10:94822400-94826400	Weak transcription	HUVEC	blood vessel
12	chr10:94822400-94827200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:94822800-94823600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:94822800-94823600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:94822800-94825400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr10:94823000-94828200	Weak transcription	Pancreas	Pancrea
17	chr10:94823000-94828400	Weak transcription	Gastric	stomach
18	chr10:94823000-94829600	Weak transcription	K562	blood
19	chr10:94823400-94823600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
20	chr10:94823400-94823600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
21	chr10:94823400-94823600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
22	chr10:94823400-94824000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr10:94823400-94824000	Weak transcription	Spleen	Spleen

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