Variant report

Variant	rs4568938
Chromosome Location	chr10:94786956-94786957
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94786714..94788563-chr10:94813570..94815319,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10748589	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10786065	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10786066	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786067	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11812460	0.87[ASN][1000 genomes]
rs12256889	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3736936	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4411227	0.83[ASN][1000 genomes]
rs4919594	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7068500	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096857	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7895716	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8211	0.88[ASN][1000 genomes]
rs835273	0.92[ASN][1000 genomes]
rs835278	0.89[ASN][1000 genomes]
rs856534	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94712600-94787800	Weak transcription	Left Ventricle	heart
2	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:94750000-94790200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr10:94750800-94794600	Weak transcription	Small Intestine	intestine
5	chr10:94762200-94791400	Weak transcription	Placenta	Placenta
6	chr10:94766200-94790000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr10:94770200-94788600	Weak transcription	K562	blood
8	chr10:94771400-94788000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr10:94772600-94791800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr10:94773400-94800000	Weak transcription	Lung	lung
11	chr10:94774400-94787600	Weak transcription	Adipose Nuclei	Adipose
12	chr10:94775200-94791400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:94775400-94812800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr10:94776200-94787600	Weak transcription	Fetal Intestine Small	intestine
15	chr10:94777400-94788800	Weak transcription	HSMMtube	muscle
16	chr10:94779800-94789800	Weak transcription	Ovary	ovary
17	chr10:94780600-94801400	Weak transcription	Brain Anterior Caudate	brain
18	chr10:94781400-94807600	Weak transcription	Psoas Muscle	Psoas
19	chr10:94782800-94787400	Strong transcription	Primary T cells from cord blood	blood
20	chr10:94782800-94788400	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr10:94783000-94790000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr10:94783200-94789000	Weak transcription	Fetal Thymus	thymus
23	chr10:94783200-94793400	Weak transcription	Fetal Heart	heart
24	chr10:94783200-94794000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr10:94783400-94787600	Weak transcription	Brain Germinal Matrix	brain
26	chr10:94783400-94791800	Weak transcription	Liver	Liver
27	chr10:94783400-94802800	Weak transcription	Stomach Smooth Muscle	stomach
28	chr10:94783600-94787800	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr10:94783800-94788200	Strong transcription	HUVEC	blood vessel
30	chr10:94784000-94787800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr10:94784200-94788200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr10:94785200-94787600	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr10:94785200-94819000	Weak transcription	Thymus	Thymus
34	chr10:94785600-94787800	Strong transcription	Primary B cells from cord blood	blood
35	chr10:94785600-94788200	Strong transcription	Fetal Muscle Trunk	muscle
36	chr10:94785800-94788000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr10:94786000-94788000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
38	chr10:94786000-94788000	Strong transcription	Skeletal Muscle Male	skeletal muscle
39	chr10:94786000-94790000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr10:94786200-94788600	Weak transcription	A549	lung
41	chr10:94786200-94793200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr10:94786200-94799200	Weak transcription	Primary B cells from peripheral blood	blood
43	chr10:94786400-94787000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr10:94786400-94787000	Enhancers	Fetal Intestine Large	intestine
45	chr10:94786400-94787600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr10:94786400-94792000	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr10:94786400-94809200	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr10:94786600-94787000	Weak transcription	Dnd41	blood
49	chr10:94786600-94787200	Strong transcription	Fetal Muscle Leg	muscle
50	chr10:94786600-94787800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain

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