Variant report
Variant | rs10793164 |
---|---|
Chromosome Location | chr11:76143019-76143020 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:5 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr11:76142850..76144735-chr11:76148116..76151075,2 | K562 | blood: | |
2 | chr11:76142495..76147142-chr11:76151618..76156672,5 | MCF-7 | breast: | |
3 | chr11:76124586..76126636-chr11:76140269..76143328,3 | MCF-7 | breast: | |
4 | chr11:76135625..76138105-chr11:76141929..76143509,2 | K562 | blood: | |
5 | chr11:76142363..76145168-chr11:76153967..76155892,2 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000255135 | Chromatin interaction |
ENSG00000158636 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs1044265 | 0.85[CEU][hapmap];0.95[GIH][hapmap];0.83[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes] |
rs10793166 | 0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs10899219 | 0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10899220 | 0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11236761 | 0.93[ASN][1000 genomes] |
rs11606394 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2155220 | 0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs2251075 | 0.81[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[YRI][hapmap];0.81[ASN][1000 genomes] |
rs2508738 | 0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs2508755 | 0.92[CEU][hapmap] |
rs2508756 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.83[YRI][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs2513511 | 0.95[CHD][hapmap];0.81[JPT][hapmap] |
rs2513514 | 0.97[CHD][hapmap];0.81[JPT][hapmap] |
rs2513515 | 0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs3016373 | 0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs4625500 | 0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4945087 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7928101 | 0.91[JPT][hapmap];0.88[ASN][1000 genomes] |
rs7940390 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv3486155 | chr11:76141104-76149702 | Weak transcription Enhancers ZNF genes & repeats Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
2 | esv3486153 | chr11:76141554-76149552 | Weak transcription ZNF genes & repeats Active TSS Enhancers | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
3 | esv3486157 | chr11:76142163-76148678 | Weak transcription ZNF genes & repeats Enhancers Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
4 | esv3462818 | chr11:76142193-76148662 | Enhancers Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
5 | esv3486154 | chr11:76142229-76148626 | ZNF genes & repeats Weak transcription Enhancers Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
6 | esv3462807 | chr11:76142239-76148640 | Weak transcription Active TSS ZNF genes & repeats Enhancers | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
7 | esv3462796 | chr11:76142257-76148619 | Enhancers Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
8 | esv3486151 | chr11:76142263-76148607 | Weak transcription Enhancers ZNF genes & repeats Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
9 | esv3462774 | chr11:76142265-76148575 | Enhancers ZNF genes & repeats Weak transcription Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
10 | esv3462785 | chr11:76142314-76148556 | Enhancers Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
11 | esv3486156 | chr11:76142324-76148556 | Weak transcription Enhancers ZNF genes & repeats Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
12 | esv3462829 | chr11:76142328-76148554 | Weak transcription Enhancers ZNF genes & repeats Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
13 | esv3486158 | chr11:76142328-76148554 | Enhancers Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
14 | esv19773 | chr11:76142373-76148527 | Enhancers ZNF genes & repeats Weak transcription Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
15 | nsv514632 | chr11:76143016-76146072 | Enhancers ZNF genes & repeats Weak transcription | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
16 | esv2421502 | chr11:76143017-76148285 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
17 | nsv442622 | chr11:76143017-76148285 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
18 | esv2760197 | chr11:76143019-76153868 | Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
No data |