Variant report

Variant	rs7940390
Chromosome Location	chr11:76204381-76204382
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76176649..76178412-chr11:76202103..76204664,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1044265	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10793164	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793166	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793167	0.82[AFR][1000 genomes]
rs10793169	0.82[AFR][1000 genomes]
rs10899219	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10899220	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899225	0.84[AFR][1000 genomes]
rs11236761	0.96[ASN][1000 genomes]
rs11606394	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2155220	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2251075	0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2508738	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2508755	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2508756	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2508760	0.83[AFR][1000 genomes]
rs2513511	0.86[JPT][hapmap]
rs2513514	0.86[JPT][hapmap]
rs2513515	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2513520	0.83[AFR][1000 genomes]
rs3016373	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4272809	0.84[AFR][1000 genomes]
rs4300410	0.82[AFR][1000 genomes]
rs4625500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945087	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4945090	0.84[AFR][1000 genomes]
rs5023625	0.84[AFR][1000 genomes]
rs7107058	0.82[AFR][1000 genomes]
rs7926009	0.82[AFR][1000 genomes]
rs7928101	0.96[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050713	chr11:76147085-76267117	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv3383733	chr11:76186353-76225544	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76166800-76219400	Weak transcription	Small Intestine	intestine
2	chr11:76168800-76234800	Weak transcription	Psoas Muscle	Psoas
3	chr11:76171200-76221200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:76184400-76235000	Weak transcription	NHEK	skin
5	chr11:76189000-76231400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr11:76189200-76211600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr11:76189400-76223000	Weak transcription	HUVEC	blood vessel
8	chr11:76190600-76207200	Weak transcription	Brain Substantia Nigra	brain
9	chr11:76190800-76234200	Weak transcription	Left Ventricle	heart
10	chr11:76191400-76204600	Weak transcription	HSMMtube	muscle
11	chr11:76191400-76204800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:76191400-76204800	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr11:76191400-76205600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr11:76191400-76206600	Weak transcription	Fetal Brain Male	brain
15	chr11:76191400-76207000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr11:76191400-76211200	Weak transcription	NH-A	brain
17	chr11:76191400-76211400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr11:76191400-76211400	Weak transcription	Fetal Kidney	kidney
19	chr11:76191400-76211400	Weak transcription	HMEC	breast
20	chr11:76191400-76211600	Weak transcription	Fetal Heart	heart
21	chr11:76191400-76221200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr11:76191400-76239000	Weak transcription	Colon Smooth Muscle	Colon
23	chr11:76191600-76204400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr11:76191600-76204600	Weak transcription	A549	lung
25	chr11:76191600-76205000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr11:76191600-76207000	Weak transcription	HSMM	muscle
27	chr11:76191600-76207200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr11:76191600-76207200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr11:76191600-76231600	Weak transcription	NHDF-Ad	bronchial
30	chr11:76192000-76207200	Weak transcription	Osteobl	bone
31	chr11:76192200-76207200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr11:76192600-76204400	Weak transcription	Brain Anterior Caudate	brain
33	chr11:76192600-76204600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr11:76192600-76205200	Weak transcription	Duodenum Mucosa	Duodenum
35	chr11:76192600-76206600	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr11:76192800-76207000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:76192800-76221200	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr11:76192800-76242800	Weak transcription	Rectal Smooth Muscle	rectum
39	chr11:76193600-76206400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr11:76193800-76204400	Weak transcription	Fetal Lung	lung
41	chr11:76193800-76207000	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr11:76196000-76206400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr11:76198000-76207200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr11:76199000-76205400	Strong transcription	Dnd41	blood
45	chr11:76199000-76210600	Weak transcription	GM12878-XiMat	blood
46	chr11:76201000-76208200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr11:76201400-76212800	Strong transcription	Primary T helper cells fromperipheralblood	blood
48	chr11:76201800-76205000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr11:76201800-76205400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr11:76202000-76204600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links