Variant report

Variant	rs4945087
Chromosome Location	chr11:76136482-76136483
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76135625..76138105-chr11:76141929..76143509,2	K562	blood:
2	chr11:76128297..76130000-chr11:76134830..76136691,2	K562	blood:
3	chr11:76132118..76140418-chr11:76149873..76158428,11	K562	blood:
4	chr11:76135965..76138472-chr11:76155761..76158428,2	K562	blood:

Variant related genes	Relation type
ENSG00000158636	Chromatin interaction
ENSG00000255135	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1044265	0.86[ASW][hapmap];0.85[CEU][hapmap];0.95[GIH][hapmap];0.98[LWK][hapmap];0.83[MEX][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10793164	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10793166	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10793167	0.95[YRI][hapmap];0.80[AFR][1000 genomes]
rs10793169	0.86[ASW][hapmap];0.83[LWK][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes]
rs10793171	0.80[ASW][hapmap]
rs10899219	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899220	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899225	0.84[AFR][1000 genomes]
rs11236749	0.85[AFR][1000 genomes]
rs11236761	0.92[ASN][1000 genomes]
rs11606394	0.86[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2155220	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2251075	0.81[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2508738	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2508755	0.92[CEU][hapmap]
rs2508756	0.86[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2508760	0.86[ASW][hapmap];0.83[LWK][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes]
rs2508761	0.80[ASW][hapmap]
rs2513508	0.80[ASW][hapmap];0.83[YRI][hapmap]
rs2513511	0.92[CHD][hapmap];0.81[JPT][hapmap]
rs2513513	0.80[ASW][hapmap]
rs2513514	0.95[CHD][hapmap];0.81[JPT][hapmap]
rs2513515	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2513520	0.83[AFR][1000 genomes]
rs2513525	0.86[ASW][hapmap];0.87[YRI][hapmap]
rs3016373	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4245443	0.80[ASW][hapmap]
rs4272809	0.86[ASW][hapmap];0.83[LWK][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes]
rs4300410	0.86[ASW][hapmap];0.83[LWK][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes]
rs4625500	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4945090	0.87[YRI][hapmap];0.84[AFR][1000 genomes]
rs5023625	0.84[AFR][1000 genomes]
rs7107058	0.86[ASW][hapmap];0.83[LWK][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes]
rs7926009	0.86[ASW][hapmap];0.83[LWK][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes]
rs7928101	0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs7940390	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8848	0.80[ASW][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4945087	ARHGEF17	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76136200-76136800	Enhancers	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links