Variant report

Variant	rs3016373
Chromosome Location	chr11:76216683-76216684
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76210981..76212652-chr11:76215333..76217549,2	K562	blood:
2	chr11:76215740..76218864-chr11:76222952..76226299,3	K562	blood:
3	chr11:76154330..76156315-chr11:76215728..76217827,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255135	Chromatin interaction
ENSG00000158636	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1044265	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10793164	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793166	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10793169	0.85[AFR][1000 genomes]
rs10899219	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10899220	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10899225	0.87[AFR][1000 genomes]
rs11236749	0.83[AFR][1000 genomes]
rs11236761	0.89[ASN][1000 genomes]
rs11606394	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2155220	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2251075	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2508738	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2508755	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2508756	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2508760	0.86[AFR][1000 genomes]
rs2513505	0.81[AFR][1000 genomes]
rs2513511	0.85[ASN][1000 genomes]
rs2513514	0.85[ASN][1000 genomes]
rs2513515	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2513520	0.86[AFR][1000 genomes]
rs4272809	0.87[AFR][1000 genomes]
rs4300410	0.85[AFR][1000 genomes]
rs4625500	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4945087	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4945090	0.87[AFR][1000 genomes]
rs5023625	0.87[AFR][1000 genomes]
rs7107058	0.85[AFR][1000 genomes]
rs7926009	0.85[AFR][1000 genomes]
rs7928101	0.91[ASN][1000 genomes]
rs7940390	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050713	chr11:76147085-76267117	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv3383733	chr11:76186353-76225544	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76166800-76219400	Weak transcription	Small Intestine	intestine
2	chr11:76168800-76234800	Weak transcription	Psoas Muscle	Psoas
3	chr11:76171200-76221200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:76184400-76235000	Weak transcription	NHEK	skin
5	chr11:76189000-76231400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr11:76189400-76223000	Weak transcription	HUVEC	blood vessel
7	chr11:76190800-76234200	Weak transcription	Left Ventricle	heart
8	chr11:76191400-76221200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr11:76191400-76239000	Weak transcription	Colon Smooth Muscle	Colon
10	chr11:76191600-76231600	Weak transcription	NHDF-Ad	bronchial
11	chr11:76192800-76221200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr11:76192800-76242800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr11:76204000-76221200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:76205200-76234200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr11:76205200-76235800	Weak transcription	NHLF	lung
16	chr11:76205200-76254400	Weak transcription	Aorta	Aorta
17	chr11:76205400-76221200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:76205400-76227000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr11:76205400-76235800	Weak transcription	Lung	lung
20	chr11:76205400-76240000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr11:76205400-76254600	Weak transcription	Right Ventricle	heart
22	chr11:76205400-76255200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr11:76205600-76221200	Weak transcription	Pancreas	Pancrea
24	chr11:76205600-76239200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr11:76205800-76221200	Weak transcription	Ovary	ovary
26	chr11:76205800-76235800	Weak transcription	Esophagus	oesophagus
27	chr11:76206000-76249200	Weak transcription	Colonic Mucosa	Colon
28	chr11:76207400-76221400	Weak transcription	Gastric	stomach
29	chr11:76207400-76239400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr11:76207400-76240000	Weak transcription	Brain Substantia Nigra	brain
31	chr11:76207400-76254400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:76207600-76219200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr11:76207600-76239400	Weak transcription	Brain Angular Gyrus	brain
34	chr11:76207800-76221400	Weak transcription	Osteobl	bone
35	chr11:76208000-76234200	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr11:76208000-76234200	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr11:76208000-76235200	Weak transcription	Brain Cingulate Gyrus	brain
38	chr11:76208200-76234200	Weak transcription	Stomach Smooth Muscle	stomach
39	chr11:76208400-76234200	Weak transcription	Brain Anterior Caudate	brain
40	chr11:76211200-76232400	Weak transcription	Fetal Stomach	stomach
41	chr11:76212000-76219800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr11:76212000-76234200	Weak transcription	Thymus	Thymus
43	chr11:76212000-76234400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr11:76212000-76235200	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr11:76212000-76235400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr11:76212200-76219600	Weak transcription	Fetal Thymus	thymus
47	chr11:76212200-76224400	Weak transcription	K562	blood
48	chr11:76212200-76229200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr11:76212200-76234200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr11:76212400-76221400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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