Variant report

Variant	rs4625500
Chromosome Location	chr11:76164959-76164960
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76164027..76165933-chr11:76175646..76177507,2	MCF-7	breast:
2	chr11:76159669..76162369-chr11:76163476..76167380,4	K562	blood:
3	chr11:76159376..76162280-chr11:76162803..76165998,5	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1044265	0.91[CEU][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10793164	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793166	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10793167	0.91[YRI][hapmap];0.82[AFR][1000 genomes]
rs10793169	0.90[YRI][hapmap];0.89[AFR][1000 genomes]
rs10899219	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10899220	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899225	0.87[AFR][1000 genomes]
rs11236749	0.86[AFR][1000 genomes]
rs11236761	0.93[ASN][1000 genomes]
rs11606394	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2155220	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2251075	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2508738	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2508755	1.00[CEU][hapmap]
rs2508756	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2508760	0.90[YRI][hapmap];0.86[AFR][1000 genomes]
rs2513505	0.81[AFR][1000 genomes]
rs2513508	0.82[YRI][hapmap]
rs2513511	0.85[JPT][hapmap]
rs2513514	0.85[JPT][hapmap]
rs2513515	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2513520	0.86[AFR][1000 genomes]
rs2513525	0.86[YRI][hapmap]
rs3016373	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4272809	0.90[YRI][hapmap];0.87[AFR][1000 genomes]
rs4300410	0.90[YRI][hapmap];0.89[AFR][1000 genomes]
rs4945087	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4945090	0.84[YRI][hapmap];0.87[AFR][1000 genomes]
rs5023625	0.87[AFR][1000 genomes]
rs7107058	0.90[YRI][hapmap];0.89[AFR][1000 genomes]
rs7926009	0.90[YRI][hapmap];0.89[AFR][1000 genomes]
rs7928101	0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs7940390	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050713	chr11:76147085-76267117	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv528623	chr11:76161389-76168219	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76157000-76166400	Weak transcription	Small Intestine	intestine
2	chr11:76157200-76166400	Weak transcription	Ovary	ovary
3	chr11:76157200-76168400	Weak transcription	Psoas Muscle	Psoas
4	chr11:76157200-76183400	Weak transcription	Gastric	stomach
5	chr11:76157200-76183600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:76157200-76183600	Weak transcription	Spleen	Spleen
7	chr11:76157200-76183800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:76157200-76190200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr11:76157200-76191200	Weak transcription	Stomach Mucosa	stomach
10	chr11:76157400-76165800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:76157400-76169800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr11:76157400-76171000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:76157400-76174800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:76157400-76179800	Weak transcription	HSMMtube	muscle
15	chr11:76157400-76183400	Weak transcription	Right Ventricle	heart
16	chr11:76157400-76183600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:76157400-76183600	Weak transcription	Esophagus	oesophagus
18	chr11:76157400-76190200	Weak transcription	Colonic Mucosa	Colon
19	chr11:76157600-76173600	Weak transcription	Brain Substantia Nigra	brain
20	chr11:76157800-76166200	Weak transcription	NHLF	lung
21	chr11:76157800-76166400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr11:76157800-76169200	Weak transcription	Brain Anterior Caudate	brain
23	chr11:76157800-76174800	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr11:76158000-76165400	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr11:76158000-76167200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:76158000-76168200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:76158000-76170000	Weak transcription	Fetal Heart	heart
28	chr11:76158000-76171400	Strong transcription	Liver	Liver
29	chr11:76158000-76171400	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr11:76158000-76171800	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr11:76158000-76171800	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr11:76158000-76172000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr11:76158000-76172000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:76158000-76174800	Weak transcription	HMEC	breast
35	chr11:76158000-76177400	Strong transcription	Fetal Thymus	thymus
36	chr11:76158000-76181000	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr11:76158200-76165600	Strong transcription	Placenta	Placenta
38	chr11:76158200-76165800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr11:76158200-76166200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr11:76158200-76169200	Weak transcription	HepG2	liver
41	chr11:76158200-76179400	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr11:76158200-76190200	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr11:76158400-76171800	Strong transcription	Primary B cells from peripheral blood	blood
44	chr11:76158400-76172200	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr11:76158600-76172200	Strong transcription	Dnd41	blood
46	chr11:76158600-76172800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr11:76158800-76169800	Weak transcription	GM12878-XiMat	blood
48	chr11:76158800-76171000	Weak transcription	NHEK	skin
49	chr11:76159000-76172800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr11:76159400-76167400	Strong transcription	Primary T helper cells PMA-I stimulated	--

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