Variant report

Variant	rs10899220
Chromosome Location	chr11:76173237-76173238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76152066..76158313-chr11:76167740..76173788,10	K562	blood:

Variant related genes	Relation type
ENSG00000255135	Chromatin interaction
ENSG00000158636	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1044265	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10793164	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793166	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10793169	0.86[AFR][1000 genomes]
rs10899219	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10899225	0.88[AFR][1000 genomes]
rs11236749	0.84[AFR][1000 genomes]
rs11236761	0.93[ASN][1000 genomes]
rs11606394	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2155220	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2251075	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2508738	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2508756	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2508760	0.87[AFR][1000 genomes]
rs2513505	0.82[AFR][1000 genomes]
rs2513515	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2513520	0.87[AFR][1000 genomes]
rs3016373	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4272809	0.88[AFR][1000 genomes]
rs4300410	0.86[AFR][1000 genomes]
rs4625500	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945087	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4945090	0.88[AFR][1000 genomes]
rs5023625	0.88[AFR][1000 genomes]
rs7107058	0.86[AFR][1000 genomes]
rs7109548	0.80[AFR][1000 genomes]
rs7926009	0.86[AFR][1000 genomes]
rs7928101	0.88[ASN][1000 genomes]
rs7940390	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050713	chr11:76147085-76267117	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76157200-76183400	Weak transcription	Gastric	stomach
2	chr11:76157200-76183600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:76157200-76183600	Weak transcription	Spleen	Spleen
4	chr11:76157200-76183800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:76157200-76190200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr11:76157200-76191200	Weak transcription	Stomach Mucosa	stomach
7	chr11:76157400-76174800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:76157400-76179800	Weak transcription	HSMMtube	muscle
9	chr11:76157400-76183400	Weak transcription	Right Ventricle	heart
10	chr11:76157400-76183600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:76157400-76183600	Weak transcription	Esophagus	oesophagus
12	chr11:76157400-76190200	Weak transcription	Colonic Mucosa	Colon
13	chr11:76157600-76173600	Weak transcription	Brain Substantia Nigra	brain
14	chr11:76157800-76174800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr11:76158000-76174800	Weak transcription	HMEC	breast
16	chr11:76158000-76177400	Strong transcription	Fetal Thymus	thymus
17	chr11:76158000-76181000	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr11:76158200-76179400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr11:76158200-76190200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr11:76159800-76190400	Weak transcription	Colon Smooth Muscle	Colon
21	chr11:76160000-76178800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr11:76162200-76173600	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr11:76162200-76183600	Weak transcription	Lung	lung
24	chr11:76164000-76174800	Weak transcription	Brain Germinal Matrix	brain
25	chr11:76164400-76174800	Weak transcription	Rectal Smooth Muscle	rectum
26	chr11:76164400-76182400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr11:76164400-76183600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr11:76164600-76182800	Weak transcription	Fetal Brain Male	brain
29	chr11:76164800-76188600	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr11:76165600-76173400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr11:76165600-76183400	Weak transcription	Aorta	Aorta
32	chr11:76165600-76183400	Weak transcription	Pancreas	Pancrea
33	chr11:76166000-76173400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:76166000-76175000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr11:76166800-76183600	Weak transcription	Osteobl	bone
36	chr11:76166800-76219400	Weak transcription	Small Intestine	intestine
37	chr11:76167000-76174800	Weak transcription	NHDF-Ad	bronchial
38	chr11:76167000-76176200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr11:76167000-76183800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr11:76167200-76175000	Weak transcription	NH-A	brain
41	chr11:76167200-76190200	Weak transcription	NHLF	lung
42	chr11:76167400-76174800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr11:76167800-76173600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr11:76167800-76192000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr11:76168200-76174800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr11:76168200-76179000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr11:76168400-76174800	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr11:76168600-76178800	Strong transcription	Hela-S3	cervix
49	chr11:76168600-76179400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr11:76168600-76187000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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