Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24312577..24316019-chr6:24320665..24323632,3	MCF-7	breast:
2	chr6:24314909..24317500-chr6:24318637..24321467,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1087289	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10946689	1.00[YRI][hapmap]
rs10946690	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1340695	0.89[ASN][1000 genomes]
rs2185599	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2274305	0.81[AFR][1000 genomes]
rs3846829	0.83[ASN][1000 genomes]
rs3846831	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3846832	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3857542	0.91[ASN][1000 genomes]
rs3895346	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4712817	0.84[AFR][1000 genomes]
rs4712818	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7752761	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7770593	0.93[ASN][1000 genomes]
rs793836	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs793838	0.81[EUR][1000 genomes]
rs793858	0.80[EUR][1000 genomes]
rs9295619	0.82[EUR][1000 genomes]
rs9393540	0.84[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10806987	GMNN	cis	cerebellum	SCAN
rs10806987	IARS	trans	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24314200-24315800	Weak transcription	HSMM	muscle
2	chr6:24314200-24321600	Weak transcription	Fetal Heart	heart
3	chr6:24314400-24316000	Weak transcription	Pancreas	Pancrea
4	chr6:24314400-24316000	Enhancers	HepG2	liver
5	chr6:24314400-24316200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:24314400-24316200	Weak transcription	HSMMtube	muscle
7	chr6:24314400-24321800	Weak transcription	NH-A	brain
8	chr6:24314600-24316000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:24315000-24319600	Weak transcription	Fetal Kidney	kidney
10	chr6:24315600-24316400	Enhancers	A549	lung

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