Variant report

Variant	rs1087289
Chromosome Location	chr6:24237130-24237131
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24233307..24235925-chr6:24236144..24238830,3	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10806987	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1087287	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1087288	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1087290	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1340697	0.87[ASN][1000 genomes]
rs1622103	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1770907	0.87[ASN][1000 genomes]
rs2185599	0.81[EUR][1000 genomes]
rs3846831	0.82[EUR][1000 genomes]
rs3846832	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3895346	0.82[EUR][1000 genomes]
rs4712818	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7747779	0.86[ASN][1000 genomes]
rs7752761	0.82[EUR][1000 genomes]
rs7767819	0.86[ASN][1000 genomes]
rs793832	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs793833	0.85[ASN][1000 genomes]
rs793836	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs793837	0.84[ASN][1000 genomes]
rs793838	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs793841	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs793842	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs793858	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9295618	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9295619	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9393540	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9460980	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24228800-24245600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:24229400-24243400	Weak transcription	Fetal Kidney	kidney
3	chr6:24230200-24242400	Weak transcription	Pancreas	Pancrea
4	chr6:24230600-24237200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr6:24232000-24263000	Weak transcription	Fetal Intestine Small	intestine
6	chr6:24235000-24240800	Weak transcription	HepG2	liver
7	chr6:24237000-24237800	Enhancers	Primary monocytes fromperipheralblood	blood

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