Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1087287	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1087288	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1087289	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1087290	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1340697	0.85[ASN][1000 genomes]
rs1622103	0.84[EUR][1000 genomes]
rs1770907	0.85[ASN][1000 genomes]
rs3846831	0.81[EUR][1000 genomes]
rs3895346	0.81[EUR][1000 genomes]
rs7747779	0.84[ASN][1000 genomes]
rs7752761	0.81[EUR][1000 genomes]
rs7767819	0.84[ASN][1000 genomes]
rs793832	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs793833	0.82[ASN][1000 genomes]
rs793836	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs793837	0.81[ASN][1000 genomes]
rs793838	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs793841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs793858	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9295618	0.86[ASN][1000 genomes]
rs9295619	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9393540	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9460980	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs793842	GMNN	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24199400-24224600	Weak transcription	Pancreas	Pancrea
2	chr6:24206200-24231400	Weak transcription	Fetal Intestine Small	intestine
3	chr6:24206800-24227600	Weak transcription	Fetal Kidney	kidney
4	chr6:24214600-24235400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:24217800-24231600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:24223800-24224800	Genic enhancers	HepG2	liver

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