Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10806987	0.84[EUR][1000 genomes]
rs1087287	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1087288	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1087289	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1087290	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2185599	0.83[EUR][1000 genomes]
rs3846831	0.84[EUR][1000 genomes]
rs3846832	0.84[EUR][1000 genomes]
rs3895346	0.84[EUR][1000 genomes]
rs4712818	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7752761	0.84[EUR][1000 genomes]
rs793832	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs793836	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs793838	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs793841	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs793842	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs793858	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9295618	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9295619	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9460980	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24232000-24263000	Weak transcription	Fetal Intestine Small	intestine
2	chr6:24241200-24250200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:24243800-24270000	Weak transcription	Fetal Kidney	kidney
4	chr6:24245400-24250000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:24245400-24250400	Weak transcription	Pancreas	Pancrea
6	chr6:24245800-24251000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:24245800-24251600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:24246000-24249800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:24246000-24249800	Weak transcription	HepG2	liver
10	chr6:24246000-24250400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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