Variant report

Variant	rs2185599
Chromosome Location	chr6:24314223-24314224
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24312848..24315658-chr6:24411529..24413193,2	K562	blood:
2	chr6:24312577..24316019-chr6:24320665..24323632,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10806987	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1087289	0.81[EUR][1000 genomes]
rs10946690	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1340695	0.88[ASN][1000 genomes]
rs3846829	0.83[ASN][1000 genomes]
rs3846831	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3846832	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3857542	0.90[ASN][1000 genomes]
rs3895346	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4712818	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7752761	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7770593	0.91[ASN][1000 genomes]
rs9295619	0.81[EUR][1000 genomes]
rs9393540	0.83[EUR][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24312800-24314400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr6:24312800-24314400	Enhancers	NH-A	brain
3	chr6:24313000-24314400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr6:24313400-24314400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:24313400-24314400	Enhancers	NHEK	skin
6	chr6:24313600-24314400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:24313600-24314400	Enhancers	Fetal Intestine Large	intestine
8	chr6:24313800-24314400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr6:24313800-24314400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:24313800-24314400	Flanking Active TSS	Fetal Kidney	kidney
11	chr6:24313800-24314400	Enhancers	Ovary	ovary
12	chr6:24313800-24314400	Enhancers	Pancreas	Pancrea
13	chr6:24313800-24314400	Flanking Active TSS	HepG2	liver
14	chr6:24313800-24314400	Enhancers	HMEC	breast
15	chr6:24313800-24314600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:24314000-24314400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:24314000-24314400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:24314000-24314400	Enhancers	Muscle Satellite Cultured Cells	--
19	chr6:24314000-24314400	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr6:24314000-24314400	Enhancers	HSMMtube	muscle
21	chr6:24314000-24314600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:24314200-24314400	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr6:24314200-24314400	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr6:24314200-24314800	Enhancers	A549	lung
25	chr6:24314200-24315800	Weak transcription	HSMM	muscle
26	chr6:24314200-24321600	Weak transcription	Fetal Heart	heart

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