Variant report

Variant	rs3895346
Chromosome Location	chr6:24308035-24308036
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10806987	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1087289	0.82[EUR][1000 genomes]
rs10946690	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1340695	0.87[ASN][1000 genomes]
rs2185599	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3846829	0.85[ASN][1000 genomes]
rs3846831	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3846832	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3857542	0.88[ASN][1000 genomes]
rs4712818	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7752761	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7770593	0.89[ASN][1000 genomes]
rs793836	0.81[EUR][1000 genomes]
rs793838	0.81[EUR][1000 genomes]
rs793841	0.81[EUR][1000 genomes]
rs793842	0.81[EUR][1000 genomes]
rs793858	0.80[EUR][1000 genomes]
rs9295619	0.82[EUR][1000 genomes]
rs9393540	0.84[EUR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24294600-24312000	Weak transcription	Fetal Intestine Small	intestine
2	chr6:24298000-24308200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:24303000-24310000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:24306200-24308600	Enhancers	A549	lung
5	chr6:24306400-24308200	Enhancers	HepG2	liver
6	chr6:24307800-24308600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:24307800-24308600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:24307800-24308600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr6:24307800-24308800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr6:24308000-24308400	Enhancers	Fetal Kidney	kidney
11	chr6:24308000-24308600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr6:24308000-24308600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:24308000-24308600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr6:24308000-24308600	Enhancers	HSMMtube	muscle
15	chr6:24308000-24309200	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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