Variant report

Variant	rs9295618
Chromosome Location	chr6:24248620-24248621
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1087287	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1087288	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1087289	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1087290	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs793832	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs793834	0.84[AFR][1000 genomes]
rs793836	0.90[ASN][1000 genomes]
rs793838	0.88[ASN][1000 genomes]
rs793841	0.88[ASN][1000 genomes]
rs793842	0.86[ASN][1000 genomes]
rs793858	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9295619	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9393540	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9460980	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9295618	IK	trans	cerebellum	SCAN
rs9295618	HIST1H2AK	cis	parietal	SCAN
rs9295618	IARS	trans	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24232000-24263000	Weak transcription	Fetal Intestine Small	intestine
2	chr6:24241200-24250200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:24243800-24270000	Weak transcription	Fetal Kidney	kidney
4	chr6:24245400-24250000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:24245400-24250400	Weak transcription	Pancreas	Pancrea
6	chr6:24245800-24251000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:24245800-24251600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:24246000-24249800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:24246000-24249800	Weak transcription	HepG2	liver
10	chr6:24246000-24250400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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