Variant report

Variant	rs793834
Chromosome Location	chr6:24234933-24234934
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1087287	0.90[AFR][1000 genomes]
rs1087288	0.82[AFR][1000 genomes]
rs11754526	0.83[ASN][1000 genomes]
rs11755011	0.84[ASN][1000 genomes]
rs12153942	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs1340696	0.84[ASN][1000 genomes]
rs1417215	0.83[ASN][1000 genomes]
rs1615548	0.83[ASN][1000 genomes]
rs1620407	0.83[ASN][1000 genomes]
rs1621975	0.83[ASN][1000 genomes]
rs16888894	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs16888905	0.83[ASN][1000 genomes]
rs1770461	0.83[ASN][1000 genomes]
rs1770906	0.83[ASN][1000 genomes]
rs1770908	0.83[ASN][1000 genomes]
rs1770909	0.83[ASN][1000 genomes]
rs1856837	0.83[ASN][1000 genomes]
rs2050820	0.84[ASN][1000 genomes]
rs55798554	0.83[ASN][1000 genomes]
rs57859236	0.83[ASN][1000 genomes]
rs58339591	0.84[ASN][1000 genomes]
rs6921861	0.84[ASN][1000 genomes]
rs707885	0.84[ASN][1000 genomes]
rs73394023	0.84[ASN][1000 genomes]
rs73394032	0.84[ASN][1000 genomes]
rs73726623	0.83[ASN][1000 genomes]
rs793861	0.84[CHB][hapmap];0.80[JPT][hapmap]
rs9295618	0.84[AFR][1000 genomes]
rs9460980	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Information processing speed	21130836	GWAS catalog

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs793834	HIST1H2AJ	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24214600-24235400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:24228800-24245600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:24229400-24243400	Weak transcription	Fetal Kidney	kidney
4	chr6:24230200-24242400	Weak transcription	Pancreas	Pancrea
5	chr6:24230600-24237200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr6:24232000-24263000	Weak transcription	Fetal Intestine Small	intestine
7	chr6:24234200-24235000	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr6:24234600-24235000	Genic enhancers	HepG2	liver
9	chr6:24234800-24237000	Weak transcription	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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