Variant report

Variant	rs58339591
Chromosome Location	chr6:24225933-24225934
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24225725..24227793-chr6:24228991..24230838,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11754526	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11755011	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759157	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1340696	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1417215	0.98[ASN][1000 genomes]
rs1615548	0.98[ASN][1000 genomes]
rs1620407	0.98[ASN][1000 genomes]
rs1621975	0.98[ASN][1000 genomes]
rs16888894	0.94[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs16888905	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1770461	0.98[ASN][1000 genomes]
rs1770906	0.98[ASN][1000 genomes]
rs1770908	0.98[ASN][1000 genomes]
rs1770909	0.98[ASN][1000 genomes]
rs1856837	0.98[ASN][1000 genomes]
rs2050820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55798554	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57859236	0.98[ASN][1000 genomes]
rs6921861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs707885	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394023	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394032	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73394036	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73726623	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73726632	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73726633	0.94[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs73726634	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs793834	0.84[ASN][1000 genomes]
rs793857	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24206200-24231400	Weak transcription	Fetal Intestine Small	intestine
2	chr6:24206800-24227600	Weak transcription	Fetal Kidney	kidney
3	chr6:24214600-24235400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:24217800-24231600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr6:24224800-24228800	Strong transcription	HepG2	liver
6	chr6:24225000-24229000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:24225000-24229200	Weak transcription	Pancreas	Pancrea

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