Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11754526	0.85[ASN][1000 genomes]
rs11755011	0.81[ASN][1000 genomes]
rs12153942	0.89[JPT][hapmap]
rs1340696	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1615548	0.83[EUR][1000 genomes]
rs1620407	0.83[EUR][1000 genomes]
rs16888894	0.88[CHB][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap]
rs16888905	0.82[ASN][1000 genomes]
rs1770461	0.83[EUR][1000 genomes]
rs1770906	0.83[EUR][1000 genomes]
rs1770908	0.83[EUR][1000 genomes]
rs1770909	0.83[EUR][1000 genomes]
rs2050820	0.81[ASN][1000 genomes]
rs55798554	0.85[ASN][1000 genomes]
rs58339591	0.81[ASN][1000 genomes]
rs6921861	0.81[ASN][1000 genomes]
rs707885	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73394023	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73394032	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73394036	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73726623	0.82[ASN][1000 genomes]
rs73726632	0.91[ASN][1000 genomes]
rs73726633	0.94[ASN][1000 genomes]
rs73726634	0.88[ASN][1000 genomes]
rs793833	0.92[AFR][1000 genomes]
rs793861	0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24228800-24245600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:24232000-24263000	Weak transcription	Fetal Intestine Small	intestine
3	chr6:24241200-24250200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:24242600-24245600	Enhancers	Rectal Smooth Muscle	rectum
5	chr6:24243600-24245800	Enhancers	Colon Smooth Muscle	Colon
6	chr6:24243800-24270000	Weak transcription	Fetal Kidney	kidney
7	chr6:24245000-24245800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:24245000-24246000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr6:24245000-24246000	Strong transcription	HepG2	liver
10	chr6:24245200-24245600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:24245400-24250000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:24245400-24250400	Weak transcription	Pancreas	Pancrea

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