Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:23176286..23178062-chr6:24249606..24251613,2	K562	blood:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11754526	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11755011	0.84[ASN][1000 genomes]
rs11759157	0.81[ASN][1000 genomes]
rs1340696	0.84[ASN][1000 genomes]
rs1417215	0.83[ASN][1000 genomes]
rs1615548	0.83[ASN][1000 genomes]
rs1620407	0.83[ASN][1000 genomes]
rs1621975	0.83[ASN][1000 genomes]
rs16888905	0.85[ASN][1000 genomes]
rs1770461	0.83[ASN][1000 genomes]
rs1770906	0.83[ASN][1000 genomes]
rs1770908	0.83[ASN][1000 genomes]
rs1770909	0.83[ASN][1000 genomes]
rs1856837	0.83[ASN][1000 genomes]
rs2050820	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55798554	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57859236	0.83[ASN][1000 genomes]
rs58339591	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6921861	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs707885	0.84[ASN][1000 genomes]
rs73394023	0.84[ASN][1000 genomes]
rs73394032	0.89[ASN][1000 genomes]
rs73394036	0.94[ASN][1000 genomes]
rs73726623	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73726632	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73726633	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs793857	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24232000-24263000	Weak transcription	Fetal Intestine Small	intestine
2	chr6:24243800-24270000	Weak transcription	Fetal Kidney	kidney
3	chr6:24245400-24250400	Weak transcription	Pancreas	Pancrea
4	chr6:24245800-24251000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:24245800-24251600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:24246000-24250400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:24249800-24250800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:24249800-24252600	Strong transcription	HepG2	liver
9	chr6:24249800-24253000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr6:24249800-24253200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:24250000-24251400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr6:24250000-24253200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:24250200-24253200	Enhancers	HUES48 Cell Line	embryonic stem cell

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