Variant report

Variant	rs73726633
Chromosome Location	chr6:24250138-24250139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11754526	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11755011	0.81[AFR][1000 genomes]
rs16888905	0.81[AFR][1000 genomes]
rs2050820	0.94[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs55798554	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58339591	0.94[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6921861	0.94[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs73394032	0.81[ASN][1000 genomes]
rs73394036	0.87[ASN][1000 genomes]
rs73726623	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73726632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73726634	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs793857	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24232000-24263000	Weak transcription	Fetal Intestine Small	intestine
2	chr6:24241200-24250200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:24243800-24270000	Weak transcription	Fetal Kidney	kidney
4	chr6:24245400-24250400	Weak transcription	Pancreas	Pancrea
5	chr6:24245800-24251000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:24245800-24251600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:24246000-24250400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:24249800-24250800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:24249800-24252600	Strong transcription	HepG2	liver
10	chr6:24249800-24253000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr6:24249800-24253200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr6:24250000-24251400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr6:24250000-24253200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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