Variant report

Variant	rs11754526
Chromosome Location	chr6:24232489-24232490
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11755011	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11759157	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1340696	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1417215	0.94[ASN][1000 genomes]
rs1615548	0.94[ASN][1000 genomes]
rs1620407	0.94[ASN][1000 genomes]
rs1621975	0.94[ASN][1000 genomes]
rs16888894	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs16888905	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1770461	0.94[ASN][1000 genomes]
rs1770906	0.94[ASN][1000 genomes]
rs1770908	0.94[ASN][1000 genomes]
rs1770909	0.94[ASN][1000 genomes]
rs1856837	0.94[ASN][1000 genomes]
rs2050820	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55798554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57859236	0.94[ASN][1000 genomes]
rs58339591	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6921861	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs707885	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73394023	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73394032	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73394036	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73726623	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73726632	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73726633	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73726634	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs793834	0.83[ASN][1000 genomes]
rs793857	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24214600-24235400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:24228800-24245600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:24229400-24243400	Weak transcription	Fetal Kidney	kidney
4	chr6:24229800-24234600	Strong transcription	HepG2	liver
5	chr6:24230200-24242400	Weak transcription	Pancreas	Pancrea
6	chr6:24230600-24234400	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr6:24230600-24237200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr6:24231600-24232800	Enhancers	Colon Smooth Muscle	Colon
9	chr6:24231600-24232800	Enhancers	Rectal Smooth Muscle	rectum
10	chr6:24232000-24263000	Weak transcription	Fetal Intestine Small	intestine

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