Variant report

Variant	rs11755011
Chromosome Location	chr6:24215665-24215666
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24211897..24214693-chr6:24215631..24218081,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11754526	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11759157	0.83[ASN][1000 genomes]
rs12153942	0.88[CHB][hapmap];0.89[JPT][hapmap]
rs1340696	1.00[ASN][1000 genomes]
rs1417215	0.98[ASN][1000 genomes]
rs1615548	0.98[ASN][1000 genomes]
rs1620407	0.98[ASN][1000 genomes]
rs1621975	0.98[ASN][1000 genomes]
rs16888894	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16888905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1770461	0.98[ASN][1000 genomes]
rs1770906	0.98[ASN][1000 genomes]
rs1770908	0.98[ASN][1000 genomes]
rs1770909	0.98[ASN][1000 genomes]
rs1856837	0.98[ASN][1000 genomes]
rs2050820	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55798554	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57859236	0.98[ASN][1000 genomes]
rs58339591	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921861	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs707885	1.00[ASN][1000 genomes]
rs73394023	1.00[ASN][1000 genomes]
rs73394032	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73394036	0.88[ASN][1000 genomes]
rs73726623	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73726632	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73726633	0.81[AFR][1000 genomes]
rs73726634	0.84[ASN][1000 genomes]
rs793834	0.84[ASN][1000 genomes]
rs793857	0.81[ASN][1000 genomes]
rs793861	0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv601146	chr6:24166233-24215665	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24199400-24224600	Weak transcription	Pancreas	Pancrea
2	chr6:24206200-24231400	Weak transcription	Fetal Intestine Small	intestine
3	chr6:24206800-24227600	Weak transcription	Fetal Kidney	kidney
4	chr6:24214600-24235400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:24214800-24216800	Strong transcription	HepG2	liver
6	chr6:24215000-24215800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:24215000-24215800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:24215000-24215800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr6:24215000-24215800	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr6:24215000-24216000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr6:24215000-24216000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr6:24215200-24215800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr6:24215200-24216200	Enhancers	H9 Cell Line	embryonic stem cell
14	chr6:24215400-24215800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:24215400-24216000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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