Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24227048..24229838-chr6:24232947..24235192,3	MCF-7	breast:
2	chr6:24225725..24227793-chr6:24228991..24230838,2	K562	blood:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11754526	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11755011	1.00[ASN][1000 genomes]
rs11759157	0.83[ASN][1000 genomes]
rs1340696	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1417215	0.98[ASN][1000 genomes]
rs1615548	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1620407	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1621975	0.98[ASN][1000 genomes]
rs16888894	0.86[ASN][1000 genomes]
rs16888905	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1770461	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1770906	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1770908	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1770909	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1856837	0.98[ASN][1000 genomes]
rs2050820	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55798554	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57859236	0.98[ASN][1000 genomes]
rs58339591	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921861	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs707885	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394032	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73394036	0.90[AFR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73726623	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73726632	0.86[ASN][1000 genomes]
rs73726634	0.84[ASN][1000 genomes]
rs793834	0.84[ASN][1000 genomes]
rs793857	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24206200-24231400	Weak transcription	Fetal Intestine Small	intestine
2	chr6:24214600-24235400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:24217800-24231600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:24224800-24228800	Strong transcription	HepG2	liver
5	chr6:24225000-24229000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:24225000-24229200	Weak transcription	Pancreas	Pancrea
7	chr6:24226800-24229600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:24227000-24227800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:24227000-24228800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:24227000-24230400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:24227200-24229200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:24227600-24227800	Enhancers	Ovary	ovary
13	chr6:24227600-24229000	Enhancers	Brain Germinal Matrix	brain
14	chr6:24227600-24229200	Enhancers	Brain Anterior Caudate	brain
15	chr6:24227600-24229400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr6:24227600-24229400	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr6:24227600-24229400	Enhancers	Fetal Kidney	kidney
18	chr6:24227600-24229600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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