Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24227048..24229838-chr6:24232947..24235192,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1087287	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1087288	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1087289	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1087290	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1340697	0.87[ASN][1000 genomes]
rs1622103	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1770907	0.87[ASN][1000 genomes]
rs7747779	0.87[ASN][1000 genomes]
rs7767819	0.87[ASN][1000 genomes]
rs793832	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs793833	0.86[ASN][1000 genomes]
rs793834	0.81[AFR][1000 genomes]
rs793836	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs793837	0.85[ASN][1000 genomes]
rs793838	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs793841	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs793842	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs793858	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9295618	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9295619	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9393540	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9460980	HIST1H2AK	cis	parietal	SCAN
rs9460980	HIST1H4A	cis	parietal	SCAN
rs9460980	IARS	trans	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24214600-24235400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:24228800-24245600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:24229400-24243400	Weak transcription	Fetal Kidney	kidney
4	chr6:24229800-24234600	Strong transcription	HepG2	liver
5	chr6:24230200-24242400	Weak transcription	Pancreas	Pancrea
6	chr6:24230600-24234400	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr6:24230600-24237200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr6:24232000-24263000	Weak transcription	Fetal Intestine Small	intestine

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