Variant report

Variant	rs10808406
Chromosome Location	chr8:106724356-106724357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10106386	0.83[CEU][hapmap]
rs1025856	0.87[EUR][1000 genomes]
rs10808407	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs11776679	0.87[EUR][1000 genomes]
rs12542643	0.80[CEU][hapmap]
rs1578995	0.83[CEU][hapmap]
rs2165644	0.87[EUR][1000 genomes]
rs28565020	0.86[EUR][1000 genomes]
rs6992301	0.86[EUR][1000 genomes]
rs7003445	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs753536	0.81[EUR][1000 genomes]
rs7816793	0.85[EUR][1000 genomes]
rs7823563	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831418	chr8:106648456-106833333	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10808406	PLXNA3	trans	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106647400-106735200	Weak transcription	K562	blood
2	chr8:106715800-106727200	Weak transcription	Ovary	ovary
3	chr8:106721000-106735400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:106722600-106727800	Weak transcription	Fetal Lung	lung
5	chr8:106722600-106728600	Weak transcription	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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