Variant report

Variant	rs28565020
Chromosome Location	chr8:106738798-106738799
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10106386	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1025856	0.95[AFR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10808406	0.86[EUR][1000 genomes]
rs11776679	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12541049	0.99[ASN][1000 genomes]
rs12542643	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12545480	0.89[ASN][1000 genomes]
rs12545946	0.82[ASN][1000 genomes]
rs12546300	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12547056	0.91[ASN][1000 genomes]
rs1372621	0.83[ASN][1000 genomes]
rs1442326	0.91[ASN][1000 genomes]
rs1578995	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16873601	0.90[ASN][1000 genomes]
rs1992471	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2165644	0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3779776	0.81[ASN][1000 genomes]
rs4302813	0.91[ASN][1000 genomes]
rs57566398	0.97[ASN][1000 genomes]
rs58307372	0.91[ASN][1000 genomes]
rs6469013	0.80[ASN][1000 genomes]
rs6992301	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7003445	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73305060	0.81[ASN][1000 genomes]
rs73305067	0.82[ASN][1000 genomes]
rs73305069	0.83[ASN][1000 genomes]
rs73305073	0.97[ASN][1000 genomes]
rs753534	0.83[ASN][1000 genomes]
rs753535	0.83[ASN][1000 genomes]
rs753536	0.97[AFR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7816793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7823089	0.82[ASN][1000 genomes]
rs7823563	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7836133	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831418	chr8:106648456-106833333	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv891260	chr8:106737459-106808078	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106729200-106742600	Weak transcription	Right Ventricle	heart
2	chr8:106734200-106743200	Weak transcription	Aorta	Aorta
3	chr8:106735400-106742200	Weak transcription	K562	blood
4	chr8:106736000-106742600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr8:106738000-106739200	Enhancers	Ovary	ovary
6	chr8:106738000-106742600	Weak transcription	Adipose Nuclei	Adipose
7	chr8:106738400-106742400	Weak transcription	Fetal Lung	lung
8	chr8:106738600-106739000	Enhancers	Colon Smooth Muscle	Colon

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