Variant report

Variant	rs1025856
Chromosome Location	chr8:106733869-106733870
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10106386	1.00[ASW][hapmap];0.92[CEU][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10808406	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs10808407	0.84[CEU][hapmap]
rs11776679	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12541049	0.83[ASN][1000 genomes]
rs12542643	0.92[CEU][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12545946	0.97[ASN][1000 genomes]
rs12546300	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12547056	0.84[CHD][hapmap];0.90[JPT][hapmap]
rs12550547	0.89[ASN][1000 genomes]
rs1372621	0.96[ASN][1000 genomes]
rs1578995	0.87[ASW][hapmap];0.92[CEU][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.96[LWK][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs16873601	0.90[JPT][hapmap]
rs1992471	0.92[EUR][1000 genomes]
rs2028552	0.92[ASN][1000 genomes]
rs2165644	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28565020	0.95[AFR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3779776	0.96[ASN][1000 genomes]
rs57566398	0.81[ASN][1000 genomes]
rs6469013	0.92[ASN][1000 genomes]
rs6992301	0.98[AFR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7003445	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73305060	0.96[ASN][1000 genomes]
rs73305067	0.97[ASN][1000 genomes]
rs73305069	0.96[ASN][1000 genomes]
rs73305073	0.81[ASN][1000 genomes]
rs753534	0.96[ASN][1000 genomes]
rs753535	0.96[ASN][1000 genomes]
rs753536	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7816793	0.95[AFR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7823563	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7836133	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9643019	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831418	chr8:106648456-106833333	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106647400-106735200	Weak transcription	K562	blood
2	chr8:106721000-106735400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:106729200-106736400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr8:106729200-106742600	Weak transcription	Right Ventricle	heart
5	chr8:106733600-106734000	Weak transcription	Ovary	ovary

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