Variant report

Variant	rs2028552
Chromosome Location	chr8:106745872-106745873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:106738954..106740692-chr8:106745234..106747523,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10106386	0.90[JPT][hapmap]
rs1025856	0.92[ASN][1000 genomes]
rs12542643	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs12545480	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12545946	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12547056	0.81[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs12550547	0.93[ASN][1000 genomes]
rs1372621	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1442326	0.81[ASN][1000 genomes]
rs1578995	0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs16873601	1.00[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1992471	0.81[ASN][1000 genomes]
rs2165644	0.89[ASN][1000 genomes]
rs3779776	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4302813	0.81[ASN][1000 genomes]
rs57566398	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58307372	0.81[ASN][1000 genomes]
rs6469013	0.98[ASN][1000 genomes]
rs7003445	0.86[ASN][1000 genomes]
rs73305060	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73305067	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73305069	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73305073	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs753534	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs753535	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs753536	0.92[ASN][1000 genomes]
rs7823089	0.83[EUR][1000 genomes]
rs7836133	0.96[ASN][1000 genomes]
rs9643019	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9643020	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831418	chr8:106648456-106833333	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv891260	chr8:106737459-106808078	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106742400-106746200	Enhancers	Fetal Heart	heart
2	chr8:106742800-106760000	Weak transcription	Left Ventricle	heart
3	chr8:106743400-106746200	Weak transcription	Fetal Brain Female	brain
4	chr8:106743400-106755600	Weak transcription	Right Ventricle	heart
5	chr8:106743600-106768400	Weak transcription	Psoas Muscle	Psoas
6	chr8:106743800-106746200	Weak transcription	Right Atrium	heart
7	chr8:106743800-106753200	Weak transcription	Aorta	Aorta
8	chr8:106743800-106755400	Weak transcription	Ovary	ovary
9	chr8:106743800-106756000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr8:106744000-106746800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr8:106744200-106746000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr8:106744200-106746000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr8:106744400-106755800	Weak transcription	Adipose Nuclei	Adipose
14	chr8:106744800-106751200	Weak transcription	NHLF	lung
15	chr8:106745600-106749200	Weak transcription	K562	blood
16	chr8:106745800-106747000	Enhancers	Colon Smooth Muscle	Colon
17	chr8:106745800-106747000	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links