Variant report

Variant	rs12545480
Chromosome Location	chr8:106757932-106757933
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10106386	0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11776679	0.88[ASN][1000 genomes]
rs12541049	0.91[ASN][1000 genomes]
rs12542643	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12545946	1.00[EUR][1000 genomes]
rs12546300	0.95[ASN][1000 genomes]
rs12547056	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12550547	0.82[ASN][1000 genomes]
rs1372621	0.89[EUR][1000 genomes]
rs1442326	0.99[ASN][1000 genomes]
rs1578995	0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs16873601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1992471	0.92[ASN][1000 genomes]
rs2028552	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28565020	0.89[ASN][1000 genomes]
rs3779776	1.00[EUR][1000 genomes]
rs4302813	0.97[ASN][1000 genomes]
rs57566398	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58307372	0.98[ASN][1000 genomes]
rs6469013	0.81[ASN][1000 genomes]
rs6992301	0.89[ASN][1000 genomes]
rs73305060	1.00[EUR][1000 genomes]
rs73305067	1.00[EUR][1000 genomes]
rs73305069	0.89[EUR][1000 genomes]
rs73305073	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs753534	0.89[EUR][1000 genomes]
rs753535	0.89[EUR][1000 genomes]
rs7816793	0.89[ASN][1000 genomes]
rs7823089	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7823563	0.86[ASN][1000 genomes]
rs9643019	0.85[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs9643020	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831418	chr8:106648456-106833333	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv891260	chr8:106737459-106808078	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106742800-106760000	Weak transcription	Left Ventricle	heart
2	chr8:106743600-106768400	Weak transcription	Psoas Muscle	Psoas
3	chr8:106750000-106768200	Weak transcription	K562	blood
4	chr8:106750200-106760000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr8:106750600-106758400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr8:106753400-106759600	Weak transcription	Fetal Lung	lung
7	chr8:106753800-106772000	Weak transcription	Aorta	Aorta
8	chr8:106756600-106759600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:106756800-106759600	Weak transcription	Fetal Heart	heart
10	chr8:106756800-106761600	Weak transcription	Colon Smooth Muscle	Colon
11	chr8:106757200-106768200	Weak transcription	Ovary	ovary
12	chr8:106757600-106758000	Enhancers	Fetal Brain Female	brain
13	chr8:106757800-106758000	Enhancers	Brain Germinal Matrix	brain
14	chr8:106757800-106758000	Weak transcription	Fetal Brain Male	brain

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