Variant report

Variant	rs7823563
Chromosome Location	chr8:106730583-106730584
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:106104141..106105251-chr8:106729947..106730923,5	MCF-7	breast:
2	chr8:106436396..106438465-chr8:106729490..106731467,28	MCF-7	breast:
3	chr8:106436744..106437837-chr8:106729804..106730935,7	MCF-7	breast:
4	chr8:105799293..105801645-chr8:106728562..106731539,2	MCF-7	breast:
5	chr8:105800010..105800701-chr8:106730006..106730804,2	MCF-7	breast:
6	chr8:106730527..106732072-chr8:106741402..106744068,2	K562	blood:
7	chr8:105799818..105801063-chr8:106729954..106731035,13	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10106386	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1025856	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10808406	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs10808407	0.84[CEU][hapmap];0.82[TSI][hapmap]
rs11776679	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12541049	0.93[ASN][1000 genomes]
rs12542643	0.92[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12545480	0.86[ASN][1000 genomes]
rs12546300	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12547056	0.85[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs1442326	0.87[ASN][1000 genomes]
rs1578995	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16873601	0.84[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs1992471	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2165644	0.85[AFR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28565020	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4302813	0.86[ASN][1000 genomes]
rs57566398	0.92[ASN][1000 genomes]
rs58307372	0.86[ASN][1000 genomes]
rs6992301	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7003445	0.91[EUR][1000 genomes]
rs73305073	0.92[ASN][1000 genomes]
rs753536	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7816793	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7823089	0.83[ASN][1000 genomes]
rs7836133	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831418	chr8:106648456-106833333	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106647400-106735200	Weak transcription	K562	blood
2	chr8:106721000-106735400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:106727600-106733000	Weak transcription	Left Ventricle	heart
4	chr8:106727800-106730600	Enhancers	HMEC	breast
5	chr8:106727800-106730800	Enhancers	NHEK	skin
6	chr8:106727800-106730800	Enhancers	NHLF	lung
7	chr8:106728800-106730600	Enhancers	Ovary	ovary
8	chr8:106729200-106736400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr8:106729200-106742600	Weak transcription	Right Ventricle	heart
10	chr8:106729400-106733200	Weak transcription	Right Atrium	heart
11	chr8:106729600-106730600	Enhancers	A549	lung
12	chr8:106729600-106731000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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