Variant report

Variant	rs7003445
Chromosome Location	chr8:106725186-106725187
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10106386	0.93[ASW][hapmap];0.85[CEU][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.85[TSI][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1025856	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10808406	0.83[CEU][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11776679	0.89[EUR][1000 genomes]
rs12542643	0.85[CEU][hapmap];0.85[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12545946	0.89[ASN][1000 genomes]
rs12546300	0.87[AFR][1000 genomes]
rs12547056	0.82[CHD][hapmap];0.85[JPT][hapmap]
rs12550547	0.82[ASN][1000 genomes]
rs1372621	0.90[ASN][1000 genomes]
rs1578995	0.81[ASW][hapmap];0.85[CEU][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.83[TSI][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs16873601	0.85[JPT][hapmap]
rs1992471	0.82[EUR][1000 genomes]
rs2028552	0.86[ASN][1000 genomes]
rs2165644	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28565020	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3779776	0.89[ASN][1000 genomes]
rs6469013	0.87[ASN][1000 genomes]
rs6992301	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73305060	0.89[ASN][1000 genomes]
rs73305067	0.89[ASN][1000 genomes]
rs73305069	0.90[ASN][1000 genomes]
rs753534	0.90[ASN][1000 genomes]
rs753535	0.90[ASN][1000 genomes]
rs753536	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7816793	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7823563	0.91[EUR][1000 genomes]
rs7836133	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831418	chr8:106648456-106833333	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7003445	ZFPM2	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106647400-106735200	Weak transcription	K562	blood
2	chr8:106715800-106727200	Weak transcription	Ovary	ovary
3	chr8:106721000-106735400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:106722600-106727800	Weak transcription	Fetal Lung	lung
5	chr8:106722600-106728600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr8:106725000-106725200	Enhancers	NHLF	lung

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