Variant report
| Variant | rs1081905 |
|---|---|
| Chromosome Location | chr3:118554563-118554564 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs1081918 | 1.00[AMR][1000 genomes] |
| rs1353937 | 1.00[AMR][1000 genomes] |
| rs1392343 | 1.00[AMR][1000 genomes] |
| rs1995256 | 1.00[AMR][1000 genomes] |
| rs2173626 | 1.00[AMR][1000 genomes] |
| rs2649880 | 1.00[AFR][1000 genomes] |
| rs2684312 | 0.81[AFR][1000 genomes] |
| rs3021393 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs3920077 | 1.00[AMR][1000 genomes] |
| rs4687928 | 1.00[AMR][1000 genomes] |
| rs4687933 | 1.00[AMR][1000 genomes] |
| rs57102518 | 1.00[AMR][1000 genomes] |
| rs6438464 | 1.00[AMR][1000 genomes] |
| rs6438465 | 1.00[AMR][1000 genomes] |
| rs6438466 | 1.00[AMR][1000 genomes] |
| rs6438467 | 1.00[AMR][1000 genomes] |
| rs6775355 | 1.00[AMR][1000 genomes] |
| rs6791688 | 1.00[AMR][1000 genomes] |
| rs7616535 | 1.00[AMR][1000 genomes] |
| rs7616543 | 1.00[AMR][1000 genomes] |
| rs7638735 | 1.00[AMR][1000 genomes] |
| rs798570 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs798573 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs924426 | 1.00[AMR][1000 genomes] |
| rs9847292 | 1.00[AMR][1000 genomes] |
| rs9875572 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829691 | chr3:118393966-118560755 | Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:118552800-118556000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
