Variant report

Variant	rs1995256
Chromosome Location	chr3:118361798-118361799
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1081905	1.00[AMR][1000 genomes]
rs1353937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1392343	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2173626	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3021393	1.00[AMR][1000 genomes]
rs3920077	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4261874	1.00[AMR][1000 genomes]
rs4596141	1.00[AMR][1000 genomes]
rs4687928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4687933	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6438464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6438465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6438466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6438467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6775355	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6791688	1.00[AMR][1000 genomes]
rs7616535	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7616543	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7638735	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs798570	1.00[AMR][1000 genomes]
rs798573	1.00[AMR][1000 genomes]
rs924426	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9847292	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9847418	0.82[AFR][1000 genomes]
rs9875572	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829690	chr3:118205361-118378010	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118359400-118362000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr3:118359800-118362000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:118359800-118362000	Enhancers	Fetal Brain Male	brain
4	chr3:118359800-118362600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:118360400-118364400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:118361600-118362200	Enhancers	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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