Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:118363907..118366205-chr3:118367302..118368823,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1353937	0.82[AFR][1000 genomes]
rs1392343	0.91[AFR][1000 genomes]
rs1995256	0.82[AFR][1000 genomes]
rs2173626	0.91[AFR][1000 genomes]
rs3920077	0.94[AFR][1000 genomes]
rs4687928	0.82[AFR][1000 genomes]
rs4687933	0.91[AFR][1000 genomes]
rs6438464	0.82[AFR][1000 genomes]
rs6438465	0.82[AFR][1000 genomes]
rs6438466	0.82[AFR][1000 genomes]
rs6438467	0.82[AFR][1000 genomes]
rs6774888	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6775355	0.94[AFR][1000 genomes]
rs6791688	0.80[AFR][1000 genomes]
rs7616535	0.94[AFR][1000 genomes]
rs7616543	0.94[AFR][1000 genomes]
rs7638735	0.94[AFR][1000 genomes]
rs924426	0.94[AFR][1000 genomes]
rs9847292	0.94[AFR][1000 genomes]
rs9875572	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829690	chr3:118205361-118378010	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118366400-118371400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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