Variant report
| Variant | rs6438466 |
|---|---|
| Chromosome Location | chr3:118364455-118364456 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:118363907..118366205-chr3:118367302..118368823,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1081905 | 1.00[AMR][1000 genomes] |
| rs1353937 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1392343 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1995256 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2173626 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs3021393 | 1.00[AMR][1000 genomes] |
| rs3920077 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4261874 | 1.00[AMR][1000 genomes] |
| rs4596141 | 1.00[AMR][1000 genomes] |
| rs4687928 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4687933 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6438464 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6438465 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6438467 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6775355 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6791688 | 1.00[AMR][1000 genomes] |
| rs7616535 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7616543 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7638735 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs798570 | 1.00[AMR][1000 genomes] |
| rs798573 | 1.00[AMR][1000 genomes] |
| rs924426 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9847292 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9847418 | 0.82[AFR][1000 genomes] |
| rs9875572 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829690 | chr3:118205361-118378010 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:118364400-118365600 | Strong transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
