Variant report

Variant	rs798570
Chromosome Location	chr3:118539855-118539856
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1081905	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1081918	1.00[AMR][1000 genomes]
rs1353937	1.00[AMR][1000 genomes]
rs1392343	1.00[AMR][1000 genomes]
rs1995256	1.00[AMR][1000 genomes]
rs2173626	1.00[AMR][1000 genomes]
rs2649880	0.97[AFR][1000 genomes]
rs3021393	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3920077	1.00[AMR][1000 genomes]
rs4687928	1.00[AMR][1000 genomes]
rs4687933	1.00[AMR][1000 genomes]
rs57102518	1.00[AMR][1000 genomes]
rs6438464	1.00[AMR][1000 genomes]
rs6438465	1.00[AMR][1000 genomes]
rs6438466	1.00[AMR][1000 genomes]
rs6438467	1.00[AMR][1000 genomes]
rs6775355	1.00[AMR][1000 genomes]
rs6791688	1.00[AMR][1000 genomes]
rs7616535	1.00[AMR][1000 genomes]
rs7616543	1.00[AMR][1000 genomes]
rs7638735	1.00[AMR][1000 genomes]
rs798573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs924426	1.00[AMR][1000 genomes]
rs9847292	1.00[AMR][1000 genomes]
rs9875572	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829691	chr3:118393966-118560755	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118536600-118540400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:118536600-118540800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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