Variant report

Variant	rs7616543
Chromosome Location	chr3:118374832-118374833
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1081905	1.00[AMR][1000 genomes]
rs1353937	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1392343	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1995256	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2173626	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3021393	1.00[AMR][1000 genomes]
rs3920077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4261874	1.00[AMR][1000 genomes]
rs4596141	1.00[AMR][1000 genomes]
rs4687928	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4687933	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6438464	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6438465	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6438466	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6438467	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6775355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6791688	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7616535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7638735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs798570	1.00[AMR][1000 genomes]
rs798573	1.00[AMR][1000 genomes]
rs924426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9847292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9847418	0.94[AFR][1000 genomes]
rs9875572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829690	chr3:118205361-118378010	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118371400-118375000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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